RetrogeneDB ID:
retro_mputfur_234
Organism:
Location:
GL896899.1:28869753-28871241 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.2 %
Coverage:
80.26 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
Cog8
Parental gene aliases:
No gene alias available
Parental gene description:
component of oligomeric golgi complex 8 [Source:MGI Symbol;Acc:MGI:2142885]

Genomic region (view in browser)





>retro_mputfur_234
TTGCCCAGCTTCCAGCAGAGCTGCAGGAACTTTGTTAAAGAGGCTGAGGAGATCAGCTCC
AACCGCCGGATGAACACCCTGACTCTAAACCGGCACACAGAAATCCTGGAAATCCTGGAG
ATTCCTCAGCTAATGGACACCTGTGTCCGGAACAGCTATTATGAAGAGGCCTTGGAGCTT
GCAGCCTATGTACGCCGACTGGAAAGGAAATACTCCTCCATCCCTGTCATCCAGGGCATC
GTGAACGAAGTGCGCCAGTCCATGCAGCTGATGCTTAGCCAGCTGATCCAGCAGCTAAGA
ACCAACATCCAGCTCCCCGCCTGCCTCTGTGTCATTAGCTTCCTCCGGTGCATGGATGTC
TTCACTGAGGCTGAGTTGAGGGTGAAGTTTCTTCAGGCCCGAGATGCTTGGCTCCGTTCC
ATTCTGACTGCCATCCCCAATGACGATCCCTATTTCCACATCACAAAAACCATTGAGGCC
TGCCGTGTCCATCTGTTCGATATCATCACCCAGTACCGTGCCATATTCTCTGATGAGGAC
CCATTGTTGCCCCCTGCCATGGGTGAGCACACTATAAACGAGAGTGCCATCTTCTATGGC
TGGGTGCTACAGAGAGTCTCACAGTTCCTGCAGGTGCTGGAGACCGACCTTTACCGGGGG
ATTGGTGGTCGTCTAGATTCTCTGCTGGGTCAGTGCATGTACTTTGGGCTGTCCTTCAGC
CGGGTCGGGGTTGATTTCCAGGGCCAGTTGGCTCCTGTTTTCCAGCGGGTGGCCATCAGC
ACTTTCCAGAAGGCAATTCAGGAAGCAGTGGAAAAGTTCGAGGATGAAATGAATTCCTAC
ACCCTCATCTCAGCTCCAACCATCCTGGGCAGCAGTAACCTGCCTGCTGCTGTGCCAGTC
ACTCAGCCGGGGACCCTGCAGCCACCCATGGTACTCTTGGATTTCCCCCCACTTGCCTGC
TTCCTCAACAATATTCTGGTTGCCTTCAATGATCTGCGCCTCTGCTGCCCTGTGGCCCTG
GCACAGGAAGTGACTAGGGCCCTGGAGGATGCTCTTGTCAAGGTAACCAAAACAATCCTG
GCCTTCCATCGCGCAGAAGAGGCTGCTTTCAGCAGTGGGGAGTAAGAGCTCTTTGTCCAG
TTCTGCACTGTCTTCCTGGAAGACCTTGTTCCTTATTTAAATCGCTGTCTCCAAGTCCTT
TTTCCACCAGCACAGACCTTAGGCATTCCACCCACTCAGCTCTCCAAGTACGGAAACCTT
GGGCATGTGAACATCGGCCTCGTCCAGAAGCCTCTTGCCTTCCTCCTGCCGAAAAGAGAG
CTGGTCCTCTGTCTGGATGACAAGGAGCTGGCGCCGGAGCTCGCAGCTCCAGCACCCGCC
GCCGAGGAGTCAGGCATGGAACCCGCCACTGCAGCTTGCCCTGAGGATGCGCAGGAGCAG
TCGGACTCCACTGAGGCGCCACCGGCTGAGGTCCCAGGTGCAGACACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPSFQQSCRNFVKEAEEISSNRRMNTLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLR
LPSFQQSCRNFVKEAEEISSNRRMNTLTLNRHT.......IPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLR
Retrocopy
LPSFQQSCRNFVKEAEEISSNRRMNTLTLNRHTXXXXXXXIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLR


Parental protein
TNIQLPACLRVISFLRCMDFFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEHTINESAIFYG
TNIQLPACL.VISFLRCMD.FTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEHTINESAIFYG
Retrocopy
TNIQLPACLCVISFLRCMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEHTINESAIFYG


Parental protein
WVLQRVSQFLQVLETDLYRGIGGRLDSLVGQCMYFGLSFSRVGVDFRGQLAPVFQRVAISTFQKAIQEAVEKFEDEMNSYTLISAPTILGSSNLPAAVPV
WVLQRVSQFLQVLETDLYRGIGGRLDSL.GQCMYFGLSFSRVGVDF.GQLAPVFQRVAISTFQKAIQEAVEKFEDEMNSYTLISAPTILGSSNLPAAVPV
Retrocopy
WVLQRVSQFLQVLETDLYRGIGGRLDSLLGQCMYFGLSFSRVGVDFQGQLAPVFQRVAISTFQKAIQEAVEKFEDEMNSYTLISAPTILGSSNLPAAVPV


Parental protein
TQRGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQEVTRALEDALVKVTKTILAFHRAEEAAFNSEEQELFVQFCTVFLEDLVPYLNRCLQVL
TQ.GTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQEVTRALEDALVKVTKTILAFHRAEEAAF.S.E.ELFVQFCTVFLEDLVPYLNRCLQVL
Retrocopy
TQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQEVTRALEDALVKVTKTILAFHRAEEAAFSSGE*ELFVQFCTVFLEDLVPYLNRCLQVL


Parental protein
FPPAQIAQTLGIPPTQLSKYGNLGHVNIGLVQEPLAFLLPKRELVLCLDDKELAPELAAPAPAAEESGMEPAAAAARPEDAQEQADSAEAPPAEVPGADT
FPPAQ...TLGIPPTQLSKYGNLGHVNIGLVQ.PLAFLLPKRELVLCLDDKELAPELAAPAPAAEESGMEPA.AA..PEDAQEQ.DS.EAPPAEVPGADT
Retrocopy
FPPAQ---TLGIPPTQLSKYGNLGHVNIGLVQKPLAFLLPKRELVLCLDDKELAPELAAPAPAAEESGMEPATAAC-PEDAQEQSDSTEAPPAEVPGADT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide