RetrogeneDB ID:
retro_mputfur_239
Organism:
Location:
GL896899.1:127650-128084 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.35 %
Coverage:
58.37 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
YWHAZ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855]

Genomic region (view in browser)





>retro_mputfur_239
GAAGCAAAACTGACCAAGCAGGCTAAACAATATGAAGACATGGCAGTCTGCATCCTGTCC
GTAACCAAATAAGGAGCTGAATTATCTCCAATGAGGAAAGCATCTTTTTCTCAGTTACTT
GTGAAAAATGTTGTAAAAAGCCATAGGTCATTTTAAAGAGTTATCTCAAGTACCAAGCTA
AAGATAGGAGATGCTAAAGAGGTGGGGGGGAGGATTATTCATGATTACAGAGAGAAAACT
GTGACAAAGCTTAGAGTACATCTACAATGATATACTATCACTTCTGGAGAAGTTCTTGAT
CACGCTGCTCCACAAGCAGAGAGCAAAATCTTCTATTTGTAAGTGAAAGATGAGTCTTAC
TGTTACGTGTCTGGGTTGCTTCTGGTGCTGAGAGGAAAGGGATTGTGGATCAGTCACCAC
AAGCATACCATCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLS-VAYKNVVGARRSSWRVVSSIEQKTEGA-EKKQQMAREYREKIETELRD-ICNDVLSLLEKFL
.AKL..QA..Y.DMA.C..SVT..GAELS.......S....KNVV...RS..RV.SS...K...A.E........YREK..T.LR..I.ND.LSLLEKFL
Retrocopy
EAKLTKQAKQYEDMAVCILSVTK*GAELSPMRKASFSQLLVKNVVKSHRSF*RVISSTKLKIGDAKEVGGRIIHDYREKTVTKLRV\IYNDILSLLEKFL


Parental protein
IP-NASQAESKVFYLKMKGDYYRYLAE-VAAGDDKKGIVDQSQQAYQE
I...A.QAESK.FYL..K...Y.Y....VA.G...KGIVDQS.QAY..
Retrocopy
IT/AAPQAESKIFYL*VKDESYCYVSG/VASGAERKGIVDQSPQAYHQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide