RetrogeneDB

RetrogeneDB ID:
retro_mputfur_24
Organism:
Ferret ( Mustela_putorius_furo )
Location:
GL896948.1:3022732-3024484 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
ENSMPUG00000019928
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.01 %
Coverage:
94.65 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSMPUG00000004592
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_24
ATGCCATGTCAGGCACTTCGCAGAATTGGTCCAAAGCTGGTACGCAGACGAATGCTGGAA
GAAGATGTGAATGAGATGGCCCCTGCCAGAAGACGGACCACTCTGGATTTAGTGGCCCTG
GGTGTGGGCTGCACAGTGGGAGTAGGTGTGTTTGTCCTGGCTGGGGAGGTAGCTAGAGAT
GTAACAGGACCATCCATTGTGGTCTGCTTGTTGGGAGCCAGCCTGTCTTCTGGGTTGGCT
GGGCTGTGCTATGCAGAGTTTGGTGTCCAGGTTCCCTATGCTGGCTCTTCATATCTCTAC
ACCTATGTCACTATGGGTGAAATCTGGGCTTTCATCACTGGCTGGAACCTCATTGTCTTC
TTTGTTGCTCATACAGCCACTGTGGCTCGGGCTTGGACCTTAGCTTTTGACAATCTGCTT
GGGAACCAGATCTCTCAGACCCTGCATGAGAGCATCTCACCAAATGTTCCCCAGCACCTG
GGAGAAATTCTAGGCTTCATTGTTGTGGGCCTTATGTTGTTGCTGATGGAATTGCTGACT
CTGAGGAATAGGTGGATTTTCCCGGTTTCCAAAGTGGTCACGTTGGTGAAACTTTTGGCT
CTCAGTTTTGTCATCATCTCAGGCTTCATTAAGGGAGACCTGCACAACTGGAAGCTCACA
GAAGAGGACTATGTAAAGGCTGGACTCAATGACACCTCTAGCTTGGGCCCTCTGGGCTCT
GGAGGATTTGTGCCTTTTGGGTTCAGGGGGATTCTCCGTGGAGTAGCTACCTGTTTCTAT
GCATTTATTGGTTTTAGCATTATTATTACAAGAGTGGAAGAAGCCCAGAATCCTGAGCGT
TCCATCCCCATGGGCATTGTGGTTTCACTGCTCATCTGCTTTTTGTTGTATTTTGGTGTC
GCTGCAGCACTAACACTTATGGTTCCTTACTACCAGCTTCGACCTGGGAGCACATTGCCA
GAGATATTTCTCCATATTGGCTGGACAACTGCCTACTATGCTATAGCTTTTGTATTCCTC
TGTAGTCTTTCTGTCAGCATCTTTGGCTTTATGTTCCCCATACGTAATCTGATATACATG
ATGGCACAGGATGGCCTCCTGTTCCCTGTCCTTGCCAGAATCCAGACCAGCACATACATG
CCCAATGTGTCCACTGTAATCTTGGGCATCATCGTAGGAATCATGGCATTCTTCCTTGGA
CTCACTGATCTTCTGGATCTCATGTCAGTTGGGGCCCTGCTAGCTTACTCCCTGATGGCT
CTTTGTGTTCTCATCCTCAGGTACCAGCCTGAGAGGAGGAATGGGGTAAAAAAAGCACAG
GAGCAGGAAGAGAATGGACAGGCAGCAGAGAAACTGACACTACAAGAATTGTTTTTTCCA
GGGAGCCCCACCCCCACTCCACTATCTGGCTGGGTTGTCATTGTTTGCTCCTCACTACTT
GTTCTGCTGCTGGCTCTCCTCTGCCTGGTGCTGGCCCACTGGCCAGGTCTGCTTTCTGGA
GATGCAGGGGCGATCACAGTGGTTGTGCTGCTCCTGGTGCTCATTACTGGGATCACTGGG
GTCATCTGGAGACAGCCACAGAGTTCCACTCCCCTTCACTTTAAAGTCCCTGCTCTGCCT
CTCCTCCCACTCCTGAGCATCTCTGTGAATGTTTATCTTATGATGCAGATGTCAGCTGGC
ACCTGGGCCCGATTTGGTGTCTGGATGCTAACTGGGTTTACTATATACTTTGGCTACGGG
ATCCAGCACAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RTLRRVSQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCYAEFGARVPRSGSAYLYSYV
..LRR...KLVRRR.LE....E...AR...TLDLVALGVG.T.G.GV.VLAGEVA.D..GPSIV.C.L.A.LSS.LAGLCYAEFG..VP..GS.YLY.YV
Retrocopy
QALRRIGPKLVRRRMLEEDVNEMAPARRRTTLDLVALGVGCTVGVGVFVLAGEVARDVTGPSIVVCLLGASLSSGLAGLCYAEFGVQVPYAGSSYLYTYV


Parental protein
TVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISQTLQGSISLHVPHVLAEYPDFFALGLVLLLTGLLALGASESALVTKVFTVVNLLVLGF
T.GE.WAF.TGWNLI...V..TA.VARAW..AFDNL.GN.ISQTL..SIS..VP..L.E...F...GL.LLL..LL.L.......V.KV.T.V.LL.L.F
Retrocopy
TMGEIWAFITGWNLIVFFVAHTATVARAWTLAFDNLLGNQISQTLHESISPNVPQHLGEILGFIVVGLMLLLMELLTLRNRWIFPVSKVVTLVKLLALSF


Parental protein
VIISGFIKGDLHNWKLTEEDYRLTIAGLNDTNSLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRSIPVGIVISLFVCFLAYFGVS
VIISGFIKGDLHNWKLTEEDY....AGLNDT.SLGPLGSGGFVPFGF.GILRG.ATCFYAF.GF..I.T..EEAQNP.RSIP.GIV.SL..CFL.YFGV.
Retrocopy
VIISGFIKGDLHNWKLTEEDY--VKAGLNDTSSLGPLGSGGFVPFGFRGILRGVATCFYAFIGFSIIITRVEEAQNPERSIPMGIVVSLLICFLLYFGVA


Parental protein
SALTLMIPYYQLQPESPLPEAFLYTGWAPARYVVAIGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFLFEL
.ALTLM.PYYQL.P.S.LPE.FL..GW..A.Y..A...LC.LS.S..G.MFP....IY.MA.DGLLF.VLAR..T.T..P.V.TV..GII...MAF...L
Retrocopy
AALTLMVPYYQLRPGSTLPEIFLHIGWTTAYYAIAFVFLCSLSVSIFGFMFPIRNLIYMMAQDGLLFPVLARIQTSTYMPNVSTVILGIIVGIMAFFLGL


Parental protein
TDLVDLMSIGTLLAYSLVAVCVLILRYQPELRNDEDEVELQEEKLPEAEKLTLQGLFCPLNPIPTPLSGQVVYVCSSLLALLLTLLCLVLAQWPIPLLSG
TDL.DLMS.G.LLAYSL.A.CVLILRYQPE.RN.......QEE....AEKLTLQ.LF.P..P.PTPLSG.VV.VCSSLL.LLL.LLCLVLA.WP..LLSG
Retrocopy
TDLLDLMSVGALLAYSLMALCVLILRYQPERRNGVKKAQEQEENGQAAEKLTLQELFFPGSPTPTPLSGWVVIVCSSLLVLLLALLCLVLAHWP-GLLSG


Parental protein
DPVWTAVVVLLLMLITGITGVIWRQPQSPTPLHFKVPALPLLPLVSIFVNVYLMMQMTAGTWARFGVWMLIGFAIYFGYGIQHS
D.....VVVLLL.LITGITGVIWRQPQS.TPLHFKVPALPLLPL.SI.VNVYLMMQM.AGTWARFGVWML.GF.IYFGYGIQHS
Retrocopy
DAGAITVVVLLLVLITGITGVIWRQPQSSTPLHFKVPALPLLPLLSISVNVYLMMQMSAGTWARFGVWMLTGFTIYFGYGIQHS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u