RetrogeneDB ID:
retro_mputfur_242
Organism:
Location:
GL896899.1:19232130-19232597 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.45 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_mputfur_242
ATGCAGATTTTCGTAAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCG
GATACAATAGAAAATGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG
CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC
ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTATACCACTCCCAAGAAGAATAAGCATAAGAGAAAGAAGGTTAAACTG
GCAGTCCTGAAATAGTATAAGGTGGATGAGAATGGCAAAATCAGTCGCCTTCGTCGGGAG
TGCCCTTCAGATGAGTGTGGTGCTGGAGATTTTATGGCTAGCCACTTGGACAGACATACT
GTGGCAAATGTTGTCTGACCTATTGCTTCAACAAACCAGAAGACAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKL
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKL
Retrocopy
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKL


Parental protein
AVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRH-YCGKCCLTYCFNKPEDK
AVLK.YKVDENGKISRLRRECPSDECGAG.FMASH.DRH.YCGKCCLTYCFNKPEDK
Retrocopy
AVLK*YKVDENGKISRLRRECPSDECGAGDFMASHLDRH/YCGKCCLTYCFNKPEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide