RetrogeneDB ID:
retro_mputfur_245
Organism:
Location:
GL896899.1:30381800-30383054 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
93.33 %
Coverage:
73.04 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock 60kDa protein 1 [Source:UniProtKB/TrEMBL;Acc:G9K4Y8]

Genomic region (view in browser)





>retro_mputfur_245
ATGCTTCAATTGCCCACAGTCCCTCACCAAATTAGGCCTGTGTCCAGAGCACTGGCTCCT
CATCTCACTCAGGCCTATGCCAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATG
CTTTAAGGTGTAGACCTTTTAGCTAATGCTGTAGCCGTTACAATGGGGCCAAAGGGAAGA
ACAGCAATTATTGAACAGAGTTGGGGAAGTCCCAAAGTGACAAAGGATGGTGTGACCATA
GCAAAGTCAAATGACTTAAAAGATAAATACAAAAATATTGGCACTAAACTTGTTCAAGAT
GTCACCAATAACACAAATGAAGAGGTTGGGGACAGCACCACTACTGCTACTGTCTTGGCA
TGCTCTATTGCCAAGGAAGGCTTCGAGAAGATTAGCAAAGGTGCTAATCCTGTGGAAATC
AGAAGAGGTGTGATGTTAGCTGTTGATGCCATAATTGCTGAACTTAAGAAGCAGTCTGAA
CCCATGACAACCCCTGAAGAAATTGCTCAGGTTGCTACCATTTCTGCAAATGGAGACAAA
GAAATTGGCAACATTGTTTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACA
GTAAAGGATGGAAAAACACTAAATGATGAATTAGAAATTATTGAAGGCATGAAGTTTGAT
CGAGGTTACATTTCTCCATACTTTATTAATACCTCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTATTGAGTGAAAAGAAAACTTCTAGTGTCCAGTCCATTGTACCTGCT
CTTGAAATTGCCAATGCTCACCATAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGA
GAAGCTCTGAATACACTCGTTTTGAATAGGCTAAAATTTGGTCTTTAGGTTGTGGCAGTC
AAAGCTCCAGGTTTTGGTGACAATAGAAAGAACCAGCTTAAAGACATGGCTATTGCTACT
GGTGGTGCAGTTTTTGGGGAAGAAGGATTGACTCTAAATCTTGAAGATGTTCAGCCTCAC
GACTTAGGAAAAGTTGGAGAGGTCCTTGTGACCAAAGATGATGCCATGCTTTTAAAAGGA
AAAGGTGACAAGGCTCAAATTGAAAAATGTATTCAAGAAATCATTGAGCAGTTAGATATT
ACAACTAGTGAATATGAAAAGGAAAAGCTGAATGAACGTTTGGCAAAACTCTCAGATGGC
GTAGCTGTGTTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD
ML.LP.V..QIRPVSRALAPHLT.AYAKDVKFGADARALML.GVDLLA.AVAVTMGPKGRT.IIEQSWGSPKVTKDGVT.AKS.DLKDKYKNIG.KLVQD
Retrocopy
MLQLPTVPHQIRPVSRALAPHLTQAYAKDVKFGADARALML*GVDLLANAVAVTMGPKGRTAIIEQSWGSPKVTKDGVTIAKSNDLKDKYKNIGTKLVQD


Parental protein
VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRESGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGV
V.NNTNEE.GD.TTTATVLA.SIAKEGFEKISKGANPVEIRR..GVMLAVDA.IAELKKQS.P.TTPEEIAQVATISANGDKEIGNI.SDAMKKVGRKGV
Retrocopy
VTNNTNEEVGDSTTTATVLACSIAKEGFEKISKGANPVEIRR--GVMLAVDAIIAELKKQSEPMTTPEEIAQVATISANGDKEIGNIVSDAMKKVGRKGV


Parental protein
ITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVV
ITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKK.SSVQSIVPALEIANAH.KPLVIIAEDVDGEAL.TLVLNRLK.GL.VV
Retrocopy
ITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKTSSVQSIVPALEIANAHHKPLVIIAEDVDGEALNTLVLNRLKFGL*VV


Parental protein
AVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLS
AVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEV.VTKDDAMLLKGKGDKAQIEK.IQEIIEQLDITTSEYEKEKLNERLAKLS
Retrocopy
AVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVLVTKDDAMLLKGKGDKAQIEKCIQEIIEQLDITTSEYEKEKLNERLAKLS


Parental protein
DGVAVLKVGGTSDVEVNEKK
DGVAVLKVGGTSDVEVNEKK
Retrocopy
DGVAVLKVGGTSDVEVNEKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide