RetrogeneDB ID:
retro_mputfur_250
Organism:
Location:
GL896899.1:34662170-34662946 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.0 %
Coverage:
99.62 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
Nsa2
Parental gene aliases:
No gene alias available
Parental gene description:
NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]

Genomic region (view in browser)





>retro_mputfur_250
CCACAAAATGAATATATTGAGTTACACTGGAAGTGCTATGGCTATCGTTTGGATTACCAT
GAGAAAAAGAGAAAGAAAGAAGGTCGAGAGGCTCATGAACCTTCAAAGAAGGCAAAAAAG
ATGACTGGTCTGAAAGCTAAGCTCTACCATAAACAGCACCATGCTGAGAAAATACAGATG
AAAAAGACTATCAAGATGCATGAAAAGAGAAACACCAAACAAAAGAATGATGAAAAGACT
CCACAAGGAGCAGTACCTGCATATCTACTGGACAGGGAGGGACAGTCTCGAGCTAAAGTA
CTTTCTAATATGATTAAACAAAAACGAAAAGAGAAAGCGGGAAAATGGGAAGTTCCTTTA
CCCAAAGTTCGAGCCCAGGGAGAAACAGAAGTATTAAAAGTTATTCGAACAAGAAAGAGA
AAGAAGAAAGCATGGAAAAGAATGGTCACTAAAGTCTGCTTTGTTGGAGATGGCTTTACT
TGAAAACCACCTAAATATGAAAGATTCATTAGACCAATGGGCTTACGTTTCAAAAGGCCC
ATGTAACACATCCTGAATTGAAAGCCACCTTTTGCCTGCCAGTACTTGGTGTAAAAAAAA
ATCCTTCATCCCCACTATATACAACTTTGGGTGTTATTACCAAAGGTACTGTAATTGAGG
TGAACGTGAGCGAGTTGGGCCTTGTGACACAAGGAGGCAAAGTTATTTGGGGAAAATATG
CCCAGGTTACCAACAATCCTGAAAATGATGGATGCATAAATGCAGTCCTGCTGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
PQNEYIELH.K.YGYRLDYHEKKRKKEGREAHE.SKKAKKM.GLKAKLYHKQ.HAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
Retrocopy
PQNEYIELHWKCYGYRLDYHEKKRKKEGREAHEPSKKAKKMTGLKAKLYHKQHHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV


Parental protein
LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFK-KAHVTHPELKATFCLPILGVK
LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT.KRKKKAWKRMVTKVCFVGDGFT.KPPKYERFIRPMGLRFK.KAHVTHPELKATFCLP.LG..
Retrocopy
LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTRKRKKKAWKRMVTKVCFVGDGFT*KPPKYERFIRPMGLRFK/KAHVTHPELKATFCLPVLGXX


Parental protein
KNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
..PSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
Retrocopy
XXPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide