RetrogeneDB ID:
retro_mputfur_253
Organism:
Location:
GL896900.1:4490770-4491497 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.78 %
Coverage:
67.78 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
Pou5f1
Parental gene aliases:
No gene alias available
Parental gene description:
POU domain, class 5, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101893]

Genomic region (view in browser)





>retro_mputfur_253
AGCCCCCCTGGGGCTGTGAAGCCAGACAATGAGAAGCAGGAGTGAAACCCTGAGGAGTCA
CAAGACATCAAAGCTCTGCAGAAAGACCTGGAACAGCTTGCCAAGCTCCTGAAGCAGAAG
AGGATCACCCTGGGATGTACTCAGGCCGATGTGGGGCTCACCCCGGGGGTTCTCTTTGGG
GAGGTGTTCAACCAAACCACCATTTGCTGTTCAGAGGCTCTGCAGCGGAGTTTCAAGAAC
ATATGTAAGTTATGGCCCCTGCGGAAGTGGGTGGAGGACGCTGACAACAAAAACCTACGG
AGATATGCAAAGCAGAAACCCTCGTGCAGGCCTGAAAGAGAAAGTGAACGAGTATGGAGA
GCCGCGTGAAAGGCAACCTGGAGAACACATTCCTGCAGTGCCCAAAGCCCACCCTGCAAG
AAGACACAGCCACATTGCCCAGCAGCTCGGCCTTGAGAAGGACGTGGTCCGAGTGTGGTT
CTGCAATCGTCGGCAGAAGGGCAAACGGTCAAGCAATGACTATTCCCCACGAGAGGATTC
TGAGGCTGTTGGGTCCCATTTCTCAGGGGCACCATTATCCTTTCCTCTGGCACCAGGGCC
CCATTTTGGTACCCCAGGCTATGAGGGCCCTCACTTTACTATGCTGTACTCCTCAGTCCC
TTTCCCTGAAGGTGAAGGCTTTCCCTCTGTGTCTGTCACCACTCTGGGCTCTCCCGCGCG
TCCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
APPGAVKPDKEKQEQNPEESQDIKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNEN
.PPGAVKPD.EKQE.NPEESQDIKALQKDLEQ.AKLLKQKRITLG.TQADVGLT.GVLFG.VF.QTTIC..EALQ.SFKN.CKL.PL..KWVE.ADN..N
Retrocopy
SPPGAVKPDNEKQE*NPEESQDIKALQKDLEQLAKLLKQKRITLGCTQADVGLTPGVLFGEVFNQTTICCSEALQRSFKNICKLWPL-RKWVEDADN-KN


Parental protein
LQ-EICKAETLVQARKRKRTSIENRVRGNLENMFLQC-PKP-TLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYSQREDFEAAGSPFSGAPVSFP
L..EICKAETLVQA.KRK.TS.E.RV.GNLEN.FLQC.PK.......SHIAQQLGLEKDVVRVWFCNRRQKGKRSS.DYS.RED.EA.GS.FSGAP.SFP
Retrocopy
LR/EICKAETLVQA*KRK*TSMESRVKGNLENTFLQC/PKAHPARRHSHIAQQLGLEKDVVRVWFCNRRQKGKRSSNDYSPREDSEAVGSHFSGAPLSFP


Parental protein
LAPGPHFGTPGYGGPHFTTLYSSVPFPEGEGFPSVSVTTLGSPMHSN
LAPGPHFGTPGY.GPHFT.LYSSVPFPEGEGFPSVSVTTLGSP...N
Retrocopy
LAPGPHFGTPGYEGPHFTMLYSSVPFPEGEGFPSVSVTTLGSPARPN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide