RetrogeneDB ID:
retro_mputfur_256
Organism:
Location:
GL896900.1:16466228-16466667 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.19 %
Coverage:
91.88 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_256
ATGTTCTTTAGACCTTTGAGAAAACGGAAGTTGTTCCCTTGGTCACATACTAGAATCCAC
TAGAAAGGTGATCTTGTGGACATCCAGGGGATGGGCACTGTTCAAAAAGGAGTGTCCTCC
CAAATGTTACCATGGCAAATCTGGAAAAGTCTATAGTGTTACCCAGCTTGCTCTTGCCAT
CATTATAAACGAACAGGTTAAGGTCAAGATTCTTGTCAAGAGAATGAATGTACATACTGA
GCAGGTTAAGCCCTCAAAAAGCCTAGATAGCTTCCTGAAGCACATGAAGGAACATGATCA
GAAAAAGAAGGAAGCCAAAGAGAAAGGTACTTGGGTTCAACTGACGCACTAGCCGGCTCC
ACCCGGAGAAGCATACCTCATGAGAAGCAACAGAAAAGAACCTGATCTGGTGCAACCTCT
TCCCTAGGAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGM-PHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKEN
MF.RP.RK....P.....RI..KGD.VDI.GMGTVQKG..P.KCYHGK.G.VY.VTQ.A..I..N.QVK.KIL.KR.NV..E..K.SKS.DSFLK..KE.
Retrocopy
MFFRPLRKRKLFPWS-HTRIH*KGDLVDIQGMGTVQKGV\PPKCYHGKSGKVYSVTQLALAIIINEQVKVKILVKRMNVHTEQVKPSKSLDSFLKHMKEH


Parental protein
DQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
DQKKKEAKEKGTWVQL...PAPP.EA...R.N.KEP.L..P.P.EFMA
Retrocopy
DQKKKEAKEKGTWVQLTH*PAPPGEAYLMRSNRKEPDLVQPLP*EFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide