RetrogeneDB ID:
retro_mputfur_258
Organism:
Location:
GL896900.1:25634767-25635012 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.92 %
Coverage:
70.49 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
GABARAP
Parental gene aliases:
No gene alias available
Parental gene description:
GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067]

Genomic region (view in browser)





>retro_mputfur_258
GCTCCCAGAACTCAGAGAGGAGAGCTGGACAAAAAGAATTATCTGGTGCCTTCTGATCTC
GCAGTTGGTCAGTTCTTCTTCTTGATCCGGAAGCAGTTTGTCTCCGAGCTGAGGATGCCG
AGTTTTTCTTGGTCAACAATGTCCTTCCACCGCCGAGTGCCATAGTGGGTCAGCTACTCC
ATGAAGAATACTTCCTCTGGCTCGTCTACAAGGATGAAAGTATCTTCAGTCTGTGAAGCT
GCTGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
APKARIGDLDKKKYLVPSDLTVGQFYFLIRKR-IHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGLRSCC
AP....G.LDKK.YLVPSDL.VGQF.FLIRK....LRAEDA.FF.VNNV.PP.SA..GQL..E......FL...Y.DES...L.SCC
Retrocopy
APRTQRGELDKKNYLVPSDLAVGQFFFLIRKQ/VCLRAEDAEFFLVNNVLPPPSAIVGQLLHE----EYFLWLVYKDESIFSL*SCC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide