RetrogeneDB ID:
retro_mputfur_262
Organism:
Location:
GL896900.1:3467781-3468254 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.01 %
Coverage:
81.35 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
CSRP2
Parental gene aliases:
No gene alias available
Parental gene description:
cysteine and glycine-rich protein 2 [Source:HGNC Symbol;Acc:2470]

Genomic region (view in browser)





>retro_mputfur_262
ATGCTCATCTGGAGAGCTGGAAAACAAGTGTGGGGCCTGTGGGAGCGCTGTGAACCTTGT
GGAAGAGGTTCATGGAGCTGGGAGGAGCTTCCACAGCTACTGCTTTCTGTGCATAGATTG
CAGGACAATTTTAGATGGCACAGTGGCAGTGGTGCATGATGAAGAGATCTACTTGCAAAT
CTTGCTGTAGAAAGAAGGATGGTCTGAAAGGCTATTGTTGCAGCCAGGGCACTGGCGCAC
TCGACATGGACAGTGAGGAGAGGCTGGGTATCAAACCTAAGTGTGTTCAAACTCACATGG
CTATAACACACCCAAACACTTCCAAATTGGCTCAGAAATACAGTGGTACTGAAAAGTGTC
CCACATGTAGGGATTTTGAATATGCTGCTGAGGGGATAATTGGAGCTGGAAAACCCTAGT
ACAAAAACCATTTCCTAGGTGCCAACTGTGGGAAAGATCTTGACTCCACAACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPVWGGG-NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIY-CKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPH
M..W..G.NKCGACG..V...EEV...GRSFH..CFLC..CR..LD.T....HDEEIY.CKSC..KK.G.KGY...QG.G.L.MD..ERLGIKP...Q.H
Retrocopy
MLIWRAG\NKCGACGSAVNLVEEVHGAGRSFHSYCFLCIDCRTILDGTVAVVHDEEIY\CKSCCRKKDGLKGYCCSQGTGALDMDSEERLGIKPKCVQTH


Parental protein
RPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTT
...T.PNTSK.AQKY.G.EKC..C.D..YAAE.IIGAGKP..KN.F..A.CGK.L.STT
Retrocopy
MAITHPNTSKLAQKYSGTEKCPTCRDFEYAAEGIIGAGKP*YKNHFLGANCGKDLDSTT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide