RetrogeneDB ID:
retro_mputfur_264
Organism:
Location:
GL896900.1:7846496-7847009 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.38 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
SAT1
Parental gene aliases:
No gene alias available
Parental gene description:
spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:10540]

Genomic region (view in browser)





>retro_mputfur_264
ATGGCTAAATTCGTGATCTGCCCGGCCACCACCGCCGACTGCAGTGACATCCTGCGGCTG
ATCAAGGAACTGGCTAAATACGAATACATGGAAGACCAAGTAATGTTAACTGAAAAGATC
TACTAGAGGATGGTTTCGGAGAGCACCCTTTCTACCACTGCCTGGTTGCAGAAGTGCCCA
AGGAGCACCAGTCTCCGGAAGGACACAGTGTTGTGGGTTTCTCCATGTACTACTTTACCT
ATGACCCATGGATAGACAAACTCTTGTATCTTGAGGACTTCTTCGTAATGAGTGATTATA
GAGGCTTTGGCATAGGATCAGAAATCCTGAAGAAATCTAAGCCAGGTTGCGATGAAATGT
CGCTGCAGCAGCATGCACTTCTTGGTAGCAGAATGGAACGAACCATCTATCAGCTTCTAC
AAAAGAAGAGGTGCTTCTGATCTGTCCAGCGAGGAGGGGTGGAGACTCTTCAAGATTGAC
AAGGAGTACTTGCTCAAAATGGCAGCAGAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAKFVIRPATAADCSDILRLIKELAKYEYMEDQVVLTE-KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGHSVVGFAMYYFTYDPWIGKLLYLEDFFVMSD
MAKFVI.PAT.ADCSDILRLIKELAKYEYMEDQV.LTE.KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGHSVVGF.MYYFTYDPWI.KLLYLEDFFVMSD
Retrocopy
MAKFVICPATTADCSDILRLIKELAKYEYMEDQVMLTE/KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGHSVVGFSMYYFTYDPWIDKLLYLEDFFVMSD


Parental protein
YRGFGIGSEILK-NLSQVAMKCRCSSMHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE
YRGFGIGSEILK.NLSQVAMKCRCSSMHFLVAEWNEPSI.FYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE
Retrocopy
YRGFGIGSEILK\NLSQVAMKCRCSSMHFLVAEWNEPSISFYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide