RetrogeneDB ID:
retro_mputfur_270
Organism:
Location:
GL896900.1:22622789-22623184 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.59 %
Coverage:
83.23 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
LAMTOR1
Parental gene aliases:
No gene alias available
Parental gene description:
late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Genomic region (view in browser)





>retro_mputfur_270
CCCCCGCCAAAGCCCTCAAAGGGGCAGAAGCCAACTCCCACAGCCTGCCTCCCACTTGTG
CAGGTAGATGAGCAGGCCCTGCTCTCCTCCAGCCTTGCTAAGACAGCCAACAACATCACT
GACGTGTCTGCTGTGGACAGGGAGCATCACGAGTACATGGACAGGGCAAGGCAGTAGACA
CTTGCTTGGCTGTGCTGAGCAGCAGCCTGACCCACTGAAAGAAGCTGCCATGGCTTCCGT
CTCTCACCAGCCAGCCCCGCCAAGTGCTGGCCAGCTAGCCCATCCCCTCCCCAGACTCGC
AGCAGGTCTCCAGGAGAGCTGCTTATGCCTACAGTGCACTTTCTCAGATCCCTGTGGATG
CAAAAGAGGAGCTGATTGTACAGTTTGGGTTTCCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PPTKALNGAEPNYHS-LPPTRTDEQALLSSILAKTASNIIDVSAADSQGMEQHEYMDRARQ-YSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPVP
PP.K...G..P.....LP....DEQALLSS.LAKTA.NI.DVSA.D....E.HEYMDRARQ...T.LAVLSSSLTH.KKLP.LPSLTSQP.QVLAS.P.P
Retrocopy
PPPKPSKGQKPTPTACLPLVQVDEQALLSSSLAKTANNITDVSAVDR---EHHEYMDRARQ/VDTCLAVLSSSLTH*KKLPWLPSLTSQPRQVLAS*PIP


Parental protein
FSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
..D.QQVSR.AAYAYSALSQI.VDAKEEL.VQFG.P
Retrocopy
SPDSQQVSRRAAYAYSALSQIPVDAKEELIVQFGFP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide