RetrogeneDB ID:
retro_mputfur_272
Organism:
Location:
GL896900.1:33662756-33663369 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.46 %
Coverage:
58.45 %
Frameshifts:
2
Stop codons:
6


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_272
GTGGCTGACATTGATGCCCTAAGTGATGGTGAACTATGGAAAGCCATTGACTTGTTCACA
GGTGTCCTCAAGCTGAATCTTCACTTGGCCATTCTGTATGCCAGAAAAGTCAGTGTCTTC
ATCAAATTACAGAGCCGAATGCTGCCATCTGAGACTATGACTGAGCTACTGAAATAAATC
CCAATTCAGCTCTGCCTTCTGAGTAGTGAGGGAAAGCACACAGACTTCAGGGCCATTGGA
AAGATGCAGCACGTGATCTTGCCCATGCTTGTAAACTGGATTATGAAGAAGATGCTCATG
CATGCTGGAAGAAGTTCAACCAAGGGCCCTGAAAATTGCTGAACATGTGAGAAAGGATGA
GCAAAAACATGAAGAGCAGAAGATCAAATTAAGAATAGAAAGGGTTAAGAAGGCTTGAGA
AGGACATGAGACAGCCCAGAGGGAGGAAGAAGCTAGAGGACCATCAGGAGCACAGGATGG
CTCCTTCCCAGTTTACTTTCTTGGAGGAATGCCTGGAATGGGGTAGGGTATGCCTGGAAT
GGCAGGGATGCCTGGGCTCAATGAAATTCATAGTGATCCAGAGGTTCTTATAGCCACACA
GGATCCAGAAATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQ-KPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDA
VA.IDAL.DGEL.KAIDLFT...KLN..LAILYA...SVFIKLQ..PNAAI.D.D.A.EINP.SA.P....GKAHRL.GHW..AA.DLA.ACKLDY.EDA
Retrocopy
VADIDALSDGELWKAIDLFTGVLKLNLHLAILYARKVSVFIKLQ/EPNAAI*DYD*ATEINPNSALPSE**GKAHRLQGHWKDAARDLAHACKLDYEEDA


Parental protein
-SAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEI
.S.ML.EVQPRA.KIAEH.RK.E.K.EE..IK.RIERVKKA.E.HE.AQREEEAR..SGAQ.GSFP..F.GGMPG....GMPGMA.GMPG........E.
Retrocopy
/SCMLEEVQPRALKIAEHVRKDEQKHEEQKIKLRIERVKKA*EGHETAQREEEARGPSGAQDGSFPVYFLGGMPG-MG*GMPGMA-GMPGLNEIHSDPEV


Parental protein
L---SDPEV
L....DPE.
Retrocopy
LIATQDPEI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide