RetrogeneDB ID:
retro_mputfur_282
Organism:
Location:
GL896901.1:25598744-25599729 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.97 %
Coverage:
93.98 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_282
CTTGCTGCCTGCCACTGCCTCCGGACCATGGACCCCGGGAAAGCGAGCGAGCTTCGGGAC
TTCATGAAAATGTGTAAGCAGGATCCGAGCGTTCTGCACACTGAGGAAATGCATTTCCTG
CGGGAGTGGGTGGAGAGCATGGGGGGTAAAATACCAACTGCCACTCATAAAACTAAATCA
GAAGACAGTATCAAGGAAGAAAAATCAGATAGTAAGAAGGTAGAGGAAAACATAAAGACA
GATGAACCATCAAGTGAGGAAAATGATCTAGAAATTGACAATGAAGGTGTGATTGAACCA
GATACTAATGCCCCTCAAGAAATGGGAGATGAAAATGTAGAGATAACTGAGGAAATGATG
GATCAGGCAAATGATAAAAAAGTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAG
AAATCCATTGATTTGTTCACAGATGACATCAAACTAAATCCTCGCTTGGCCATTCTGTAT
GCCAAGAGAACCAGTGTCTTCATCAAATTACAGAAGCTAAATGCTGCCATTCAAGACTGT
GACAGAGCTATTGAAATAAATCCTGATTCAGCTCAGCCTTTTAAGTAGCTTGGGGAAAGC
ACATAGAATTCTGAGCCATAGGGAAGAAGCAGCACATGATCTTGCCTTTGCTTGTAAACT
GGATTATGATGAAGATGCTATTGCAATGCTGAAAGAAGTTCAACTGAGGGCCCAGAAAAT
TGCTGAACATCGGAGAAAGTATGAGGAAAAACATGAAGAGGGAGAGATCAAAGAAAGAAT
AGAAAGGGTTAAGAAGGCTCAGGAAGAACATGAGACAGCCCAGAGGGAGGAAGAAGCCAG
ACAACAATCAGGAGCTCAGTATGGCTCTTTCCCAGGTGGCTTTCCTGGGGGAATGCCTGG
TAATTTTCCTGGAGGAATGCCTGGAATGGCAGGGGGGATGCCTGGGATGGCAGGAATGCC
TGGGCTCAATGAAATTCTTAGTGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEESDLEIDNEGVIEP
LAACHCL.TMDP.K.SELR.F.KMCKQDPSVLHTEEM.FLREWVESMGGKIP.ATHKTKSEDSIKEEK.DSKK.EENIKTDEPSSEE.DLEIDNEGVIEP
Retrocopy
LAACHCLRTMDPGKASELRDFMKMCKQDPSVLHTEEMHFLREWVESMGGKIPTATHKTKSEDSIKEEKSDSKKVEENIKTDEPSSEENDLEIDNEGVIEP


Parental protein
DTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYK-WRGK
DT.APQEMGDEN.EITEEMMDQANDKKVAAIDALNDGELQK.IDLFTD.IKLNPRLAILYAKR.SVFIKLQK.NAAI.DCDRAIEINPDSAQP.K...GK
Retrocopy
DTNAPQEMGDENVEITEEMMDQANDKKVAAIDALNDGELQKSIDLFTDDIKLNPRLAILYAKRTSVFIKLQKLNAAIQDCDRAIEINPDSAQPFK\SLGK


Parental protein
AHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQYGSFPGGFPGGMP
AHR.L.H.EEAAHDLA.ACKLDYDEDA.AMLKEVQ.RAQKIAEHRRKYE.K.EE.EIKERIERVKKA.EEHE.AQREEEAR.QSGAQYGSFPGGFPGGMP
Retrocopy
AHRILSHREEAAHDLAFACKLDYDEDAIAMLKEVQLRAQKIAEHRRKYEEKHEEGEIKERIERVKKAQEEHETAQREEEARQQSGAQYGSFPGGFPGGMP


Parental protein
GNFPGGMPGMAGGMPGMAGMPGLNEILSD
GNFPGGMPGMAGGMPGMAGMPGLNEILSD
Retrocopy
GNFPGGMPGMAGGMPGMAGMPGLNEILSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide