RetrogeneDB ID:
retro_mputfur_284
Organism:
Location:
GL896901.1:29881414-29882056 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.85 %
Coverage:
53.77 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_284
ATGGGGAAGGAAAACACTCTACCAACACTGTCGTCATTGGATATGCAGATTCAGGCAAGT
CTACCACTACTGGTTCTCTAATCTATAAATGTGGTGGGATCCATAAAATAACTATCAAAA
ATTTGAGAAGGGGGCTGCTAAGATGGGAAAGGACTCCTTCAAGAATTCCTGGATCTTGGA
TAAATTGGAAGCTGAATGTAAATGTGCTATCTCCATTGATATCTGCCTGTGGAAACTCGA
AACCAGCAAGTATTATGGGACCTTCACTGATGCCCCAGGACACAGAGACGTTATCAAAGG
TGTGATTACAGGCACATCTCACGCTGATGGTGCTGTCCTGATTGTTGCTGGTGGTGTTGA
TTAATCTGAAGCAGGTATCTCCAAGAATACACAGATCCCTGAGCATGCCCTTCTGGCTTA
CACACCGGGTGTGAAACAACTAATTGTTTGTGTCAACAAAATGGATTTCACTGAGCCCCC
CCAAGAGCCAGAAGAGGTGTGATAAAAATCATTAAGGAAGTCAGCACCTACATTAAGAAA
ATTGGCTACATCCTTGGCACAGTAGCATTTGTGCCAATTTCCGGTTGGAATGGTGACAAC
ATGCTGGAGACCAGGGCTAACATGCCTTGGTTCAGAGGATGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKEKT-HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI-EKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDF
MGKE.T...N.VVIG..DSGKSTTTG.LIYKCGGI.K.TI..KFEK.AA.MGK.SFK..W.LDKL.AE....I.IDI.LWK.ETSKYY.T..DAPGHRD.
Retrocopy
MGKENT/STNTVVIGYADSGKSTTTGSLIYKCGGIHKITI/QKFEKGAAKMGKDSFKNSWILDKLEAECKCAISIDICLWKLETSKYYGTFTDAPGHRDV


Parental protein
IKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPY-SQKRYE-EIVKEVSTYIKKIGYNPDTVAFVPISGW
IK..ITGTS.AD.AVLIVA.GV...EAGISKN.Q..EHALLAYT.GVKQLIV.VNKMD.TEPP..SQKR....I.KEVSTYIKKIGY...TVAFVPISGW
Retrocopy
IKGVITGTSHADGAVLIVAGGVD*SEAGISKNTQIPEHALLAYTPGVKQLIVCVNKMDFTEPPQ\SQKRCD\KIIKEVSTYIKKIGYILGTVAFVPISGW


Parental protein
NGDNMLEPSANMPWFKGW
NGDNMLE..ANMPWF.GW
Retrocopy
NGDNMLETRANMPWFRGW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide