RetrogeneDB ID:
retro_mputfur_286
Organism:
Location:
GL896901.1:9165140-9165855 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.8 %
Coverage:
82.76 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_286
ATGGCCCCCAAACGCCAGTCTTCGCTCCCGCCTCAAACACAGAAACCAAGACAGCCTCCT
GCCCCCAAGCCAGGGCAGATGTCAATATCTCAGCGCTTGCATAAAGGAGAAAAAGAACAG
CAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAA
GCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTTCGACAACCATTTTTT
CAGAAGAGGTTGGAATTGATCGCCAAAATCCCCAATTTTTGGGTAACAACATTTGTCAAC
CATTCGCAAGTGTCTGCACTGCTTGGGGAGGAGGATGAAGAGGCGCTGCATTATTTGACA
AGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTATTTT
GATGAAAACCCTTACTTCGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGT
GGTGATCCATCTTCAAAGTCCACTGAAATGACATGGAAATCTGGAAAGGATTTGAGGAAA
CATTCAAGTCAAACAGAATAAAGCCAGCAGGAAGAGACAGCATGAGGAACCAGAGAGCTT
CTTCACCTGGTTTATTGACCATTCTGATGCAGGTGCAGATGAGTTAGGAGAGGTCGTCAA
AGATGATATTTGGCCAAATCCATTACAGTACTACTTGGTTCCCGATATGGATGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPKRQSSLPPQMKKPRQPPAPKPGQTSTSQHLHRGAEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFV
MAPKRQSSLPPQ..KPRQPPAPKPGQ.S.SQ.LH.G.EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKR.ELIAKIPNFWVTTFV
Retrocopy
MAPKRQSSLPPQTQKPRQPPAPKPGQMSISQRLHKG-EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRLELIAKIPNFWVTTFV


Parental protein
NHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQ-NKASRKRQHEEP
NH.QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTE..WKSGKDL.K.SSQT...........E.P
Retrocopy
NHSQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEMTWKSGKDLRKHSSQTE\KASRKRQHEE-P


Parental protein
ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDD
ESFFTWF.DHSDAGADELGEV.KDDIWPNPLQYYLVPDMDD
Retrocopy
ESFFTWFIDHSDAGADELGEVVKDDIWPNPLQYYLVPDMDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide