RetrogeneDB ID:
retro_mputfur_288
Organism:
Location:
GL896901.1:19724642-19725396 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.35 %
Coverage:
89.96 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_288
GTATCCAGAGCCCTTGGTGACCTGCAAATAAAAGAGGAGGATGTCCTTCCATTTCCTTGC
AGCAGGAACCCACTTAGCTGGGACCAACATTGACTTCCAGATGGAAGCATACATCTACAA
AAGGAAGTGTGATGGGATCTACATCACTAATCTCAAGAGAACCTGGGAGAAGCTTCTGCT
GGCCGCTCGTGCCATTGTTGCCACTGACAACCCAGCTGAGGTCAGTGTCCTGTCATCCAG
GAATACTGTCCAGCAAGCTGTGCTGATGTTTGCTGCTGTTCCTGGAACCATCCCTCTGTT
GGGCCACTTTACTCCTAGAAACTTCACTAACTGGGTCCAGGCAGCCCTCCGGACGCTGAG
ACTTCTGGTGGTTCCTGATCCCAGGGCGGACCACCAGTCTCTCAAAGAGATGTCTTACAT
TAATCTACTGCCATCAGTCTCTGTAACACAGACTCTCCTCCGTGCTATGTGGACATTGCC
ATCCCTTGCAACAAATAAAGAAGCTCACTTAGTGGGTCTGATATGGTGGAAGCTGGCCCG
AGAAATTCTGTGCATGCGTGGCACCATTTCCCATGAACACCCATGGGAGGCCATGCCTGA
TCTCTGCTTCTACAGAGATCCTGAAAAGTTTGAAAAGAAATAGCATTTCCCAACTGAAAA
TTGGAGCTCTCAGCCGGCCACTGAAGACTGGTCCACAGTTCCCACTGCTCAGGCCACTGA
ATGGGTAGCAACAACCACTAAGTGGTCCTAAGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKF-LAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPI
.S.AL..LQ.KEEDVL.F.LAAGTHL.GTN.DFQME.YIYKRK.DGIYI.NLKRTWEKLLLAARAIVA..NPA.VSV.SSRNT.Q.AVL.FAA..G..P.
Retrocopy
VSRALGDLQIKEEDVLPF\LAAGTHLAGTNIDFQMEAYIYKRKCDGIYITNLKRTWEKLLLAARAIVATDNPAEVSVLSSRNTVQQAVLMFAAVPGTIPL


Parental protein
AGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNL-PTIALCNTDSPLRYVDIAIPCN-NKGAHSVGLMWWMLAREVLRMRGTISREHPWEV
.G.FTP..FTN..QAA.R..RLLVV.DPRADHQ.L.E.SY.NL...I.LCNTDSP..YVDIAIPCN.NK.AH.VGL.WW.LARE.L.MRGTIS.EHPWE.
Retrocopy
LGHFTPRNFTNWVQAALRTLRLLVVPDPRADHQSLKEMSYINL/TAISLCNTDSPPCYVDIAIPCN\NKEAHLVGLIWWKLAREILCMRGTISHEHPWEA


Parental protein
MPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEG
MPDL.FYRDPE..EK......E............T.P....T........WS.G
Retrocopy
MPDLCFYRDPEKFEKK*HFPTENWSSQPATEDWSTVPTAQATEWVATTTKWS*G


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide