RetrogeneDB ID:
retro_mputfur_289
Organism:
Location:
GL896901.1:22047310-22047926 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
87.56 %
Coverage:
59.6 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_289
GCTACCATTAATGCCCTAAATGGTGGTGAACTACAGAAAGCCATTGACTTGTTCACAGAT
GCCATCAAATTAAATCCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATC
AAATTACAGAAGCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATTGAAATAAATCCT
GATTCATCTCAGCCTTTTAAGTGGCGCAGGAAAGCACACAGACTTCTGGGTCATTGGGAA
GAAGCAGCACATGCTCTTGCCTTTGCTTGTAAACTGGATTATGATGAAGATGCTAGTGCA
ATGCTGAAAGAAGTTCAACCGAGGGCCCAGAAAATTGCTGAACATCGGAGAAAATATGAG
CGAAAACGTGAAGAGCGAGAGATCAAAGAAAGAAAGAAAGAAGGCTCGGGAAGAACATGA
GAGAGCCCAGAGGGAGGAAGAAGCCAGACAACAATCAGGAGCTCAGTATGGCTCTTTCCC
AGGTGGCTTTCCTGGGGGAATGCCTGGTAATTTTCCTGGAGGAATGCCTGGAATGGCAGG
GGGGATGCCTGGGATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGTGATCTGGAAGT
TCTTACAGCCATGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASA
A.I.ALN.GELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDS.QP.KWR.KAHRLLGHWEEAAH.LA.ACKLDYDEDASA
Retrocopy
ATINALNGGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSSQPFKWRRKAHRLLGHWEEAAHALAFACKLDYDEDASA


Parental protein
MLKEVQPRAQKIAEHRRKYERKREEREIKER-IERVKKAREEHERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILS
MLKEVQPRAQKIAEHRRKYERKREEREIKER.........E...R...EEEAR.QSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILS
Retrocopy
MLKEVQPRAQKIAEHRRKYERKREEREIKER\RKKAREEHERAQR---EEEARQQSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILS


Parental protein
DPEVLAAMQ
D.EVL.AMQ
Retrocopy
DLEVLTAMQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide