RetrogeneDB ID:
retro_mputfur_291
Organism:
Location:
GL896901.1:29873388-29873778 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.39 %
Coverage:
81.99 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
TMEM138
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 138 [Source:HGNC Symbol;Acc:26944]

Genomic region (view in browser)





>retro_mputfur_291
GTTAATTCCTTCGCAGAACTACTCTGAATGGTTCCCCTCATAGTGGTGCTTTTCGTTATC
CAGGATACTGCCATTCTCTTCAACATCAGCATGCTTTTCCTCCTGTTTTCCAACACCTTC
GTCTTCCAAGCTGGCCTGGGCAACCCTGTATTCTTGAAGTTCAAAGGGACCGTCTTCCTC
ATGGCTGTGTTCTTCGTCCCCAGCATCTTCCTTCATGTCTGGGTCATGACTTAACACTGG
AAAAACTCCCAGCTTCTTTGTCAGGAGAGAGGGACTTCAAACTCTGTATTCTGGAGACTA
GCAAGGCAGTTATACTGTTACTTCAACAAATGGACAGCTGTGAGACTGGGTGATCCTCGC
TTCTACCAGGACTCTTTATGCCTGTACAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VNSFSELLRTAPVIQLVLFIIQDIAILFNIIIIFLMFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSISLHVWVMNLRWKNSNRFVWTDGLQTLFVFQ
VNSF.ELL...P.I..VLF.IQD.AILFNI...FL.F.NTFVFQAGL.N..F.KFKGT..L.AV.F..SI.LHVWVM...WKNS.......G.....VF.
Retrocopy
VNSFAELL*MVPLI-VVLFVIQDTAILFNISMLFLLFSNTFVFQAGLGNPVFLKFKGTVFLMAVFFVPSIFLHVWVMT*HWKNSQLLCQERGTSNS-VFW


Parental protein
RLAAVLYCYFYKRTAVRLGDPRFYQDSLWLRK
RLA..LYCYF.K.TAVRLGDPRFYQDSL.L.K
Retrocopy
RLARQLYCYFNKWTAVRLGDPRFYQDSLCLYK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide