RetrogeneDB ID:
retro_mputfur_296
Organism:
Location:
GL896902.1:3285519-3286832 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.01 %
Coverage:
90.31 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ALDH3A2
Parental gene aliases:
No gene alias available
Parental gene description:
aldehyde dehydrogenase 3 family, member A2 [Source:HGNC Symbol;Acc:403]

Genomic region (view in browser)





>retro_mputfur_296
CAGCGGGCCAGAGCCGCCTTCAACTTGGGCAAGACCCGCCCGCTGCAGTTCTGGATCCAG
CAGCTGGAGGCGCTGCGGCGCATGATCAAGGAGCACGAGAAGGACATCGTGGGCGCGCTG
ACTGTAGACCTCCAGAAGAATGAATGGAATGCCTACTACGAGGAGATGGTTTATGTCCTA
GAAGAGATCGAGTACATGATCAAGAAGCTCCCCGAGTGGGCTGCAGATGAGCCCGTGGAA
AAGAGTCTCCAGACCCAGCAGGACGAGTGTTACATCCACTCCGAGCCCCTGGGCGTGGTC
CTCGTCATCGGCACCTGGAACTACCCCTTCACCGTCACCATCCAGCCCATGGTGGGCGCC
ATTGCTGCAGGGAATGCAGTGGTCACCAAGCCCTCGGAGCTGAGTGAGAACATGGCGAAC
CTGCTGGCCACCATCGTCCCTCAGTACCTGGCAGGGACCTGTACCCGGTGATCACTGGGG
GCATTCCCGAGACCACAGAGGTGCTCAAGGAAAGATTTGACCATATTCTGTACACTGGGA
ACACCGCCGTGGGGAAGAACATCATGATGGCAGCGGCCAAGCACTTGACCCCCGTCATGC
TGGAGCTGGGGGGGAAGAACCCCTGCTATGTAGACAAGGACTGTGACCTGGACATTGCCT
GCAGACGCATCGCCTGGGGGAAATTCATGAACAGCGGCCAGACCTGTGTGGGCCCCGACT
ACATCCTCTGTGACCCCTCCATCCAGAATCAAATTGTGGAGAAGCTGAAAAAGTCCCTGA
AAGAGTTCTATGGGGAGGACGCCAAGAAGTCCCGTGACTACGGAAGGATCATCAACTCCC
GGCATTTCCAGAGGGTGATGGGCTTGATGGAGGGCCAGAAAGTCGCCTATGGAGGCACGG
GGGACACGGCCACCCGATACATAGCCCCCACCATCCTCATAGATGTGGACCCCCAGTCTC
CAGTGATGCAGGAGGAGATCTTTGGGCCGGTGATGCCCATCATGTGTGTGCGCAGCCTGG
AGGAGGCCATGCAGTTCATCAACCAACGCGAGAAACCCCTGGCACTCTACGTGTTCTCTC
TAAACGACAAGGTGGTTAAGAAGGTGATTGCAGAGACATCAAGTGGTGGGGTGACGGCCA
ATGACGTCATCGTCCACATCTCTGTGCACTCCCTGCCTTACGGGGGTGTGGGGAATAGTG
GCATGGGGTCCTACCATGGCAAGAAGAGCTTTGAGACCTTCTCCCACCACCGCTCCTGCC
TGGTGAGGCCTCTACTGAATGATGAGTCCCTCAAAGCCAGGTACCCCCCGAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QRVRDAFASGRSRPLRFRLQQLEALRRMVQEREKDILQAIGADLCKSEFNAYSQEVITILGELDLVLENLSEWVTATPAKKNLLTMLDEAYVQPEPLGVV
QR.R.AF..G..RPL.F..QQLEALRRM..E.EKDI..A...DL.K.E.NAY..E....L.E.......L.EW....P..K.L.T..DE.Y...EPLGVV
Retrocopy
QRARAAFNLGKTRPLQFWIQQLEALRRMIKEHEKDIVGALTVDLQKNEWNAYYEEMVYVLEEIEYMIKKLPEWAADEPVEKSLQTQQDECYIHSEPLGVV


Parental protein
LIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSEKTAQLLAKLLPQYL-DQELYAVINGGIPETTELLKQRFDHILYTGNTAVGRIVMEAAAKHLTPV
L.IG.WNYPF..TIQP..GAIAAGNAV..KPSELSE..A.LLA...PQYL....LY.VI.GGIPETTE.LK.RFDHILYTGNTAVG...M.AAAKHLTPV
Retrocopy
LVIGTWNYPFTVTIQPMVGAIAAGNAVVTKPSELSENMANLLATIVPQYL/GRDLYPVITGGIPETTEVLKERFDHILYTGNTAVGKNIMMAAAKHLTPV


Parental protein
TLELGGKSPCYIDTDCDLDVACRRITWGKYMNCGQTCIAPDYVLCEPSLQHQIVQKIKETVKEFYGENIKESPDYERIINLRHFKRILNLLEGQKIAFGG
.LELGGK.PCY.D.DCDLD.ACRRI.WGK.MN.GQTC..PDY.LC.PS.Q.QIV.K.K...KEFYGE..K.S.DY.RIIN.RHF.R...L.EGQK.A.GG
Retrocopy
MLELGGKNPCYVDKDCDLDIACRRIAWGKFMNSGQTCVGPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIINSRHFQRVMGLMEGQKVAYGG


Parental protein
ETDEATRYVAPTILTDVDPEARVMQEEIFGPILPIVPVKDADEAIKFINSREKPLAFYIFSHNDKLVRRMINSTSSGGVTANDVIMHFTLSSLPFGGVGS
..D.ATRY.APTIL.DVDP...VMQEEIFGP..PI..V....EA..FIN.REKPLA.Y.FS.NDK.V...I..TSSGGVTANDVI.H....SLP.GGVG.
Retrocopy
TGDTATRYIAPTILIDVDPQSPVMQEEIFGPVMPIMCVRSLEEAMQFINQREKPLALYVFSLNDKVVKKVIAETSSGGVTANDVIVHISVHSLPYGGVGN


Parental protein
SGMGAYHGKYSFDTFSHQRPCLLKSLKREGANKLRYPPN
SGMG.YHGK.SF.TFSH.R.CL...L......K.RYPP.
Retrocopy
SGMGSYHGKKSFETFSHHRSCLVRPLLNDESLKARYPPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide