RetrogeneDB ID:
retro_mputfur_298
Organism:
Location:
GL896902.1:9190642-9191161 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.42 %
Coverage:
81.6 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PDCD10
Parental gene aliases:
No gene alias available
Parental gene description:
programmed cell death 10 [Source:HGNC Symbol;Acc:8761]

Genomic region (view in browser)





>retro_mputfur_298
GCAGCTCAGACACTGAGAGCAGCTTTCATTAAGGCTGAAAAAGAAAATCCAGGACTCACA
CAAGACATCATTATGAAAATTTTAGAGAAAAAAAGTGTAGAAGTTAACTTCACAGAGTCC
CTTCTTCGAATGGCAGCTGATGATGTAGAAGAGTATATGATTGAACGACCAGAGCCAGAA
TTCCAGGACCTAAATGAAAAGGCACGAGCACTTAAACAGATTCTCAGTAAGATCCCAGAT
GAGAATAATGACAGAGTGAGGTTTCTGCAGACAATCAAGGATATAGCTAGTGCAATAAAA
GAACTTCTTGACACGGTGAATAATGTCTTCAAGAAGTATCAATACCAGAACCGCAGGGCA
CTTGAACACCAAAAGAAAGAATTTGTAAAGTACTCCAAAAGTTTCAGTGATACTCTGAAA
ACCTATTTTAAAGATGGCAAGGCAATAAATGTGTTCATAAGTGCCAACCGACTAATTCAT
CAAACCAACTTGATACTTCAGACCTTCAAAACTGTGGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIK
AAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDE.NDRVRFLQTIKDIASAIK
Retrocopy
AAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDENNDRVRFLQTIKDIASAIK


Parental protein
ELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKTVA
ELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKTVA
Retrocopy
ELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKTVA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide