RetrogeneDB ID:
retro_mputfur_30
Organism:
Location:
GL896990.1:338198-338699 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.14 %
Coverage:
80.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_mputfur_30
ATGATCATCTACCTGAACACCATTAACAGTGATGAGATGTTCTCCAAGATATGGGATGGC
CCATGGGTTATGCACAGAGTTGGGGAAGATGGCAGTAAGACAGAGGGTAACATTGATGAC
TCACTTATTGGTGGAAATGCCTCCACCAAAGGCCCCAAGGGTGAAGGGACTGAAAACATA
GTCATCACTGGTGTTGATATTGTCATGAACCATCACTTACAGGAAACTGCCTTCATAGAA
GAAGCCTACAAGAAGTACATCAAAGATGACATGAAATCAATCAAAAGTAAACTTGAAGCA
CTGAGGCCAGAAAGAAGAAAACCTTTTATGACAGAGGTTGCAGAAAAAATCAAGCATATC
TTAGCTAATTTAAAAAATTATGAGTTCTTTATTGGTGAAAACATGAATCCAGATGGGATG
GTTGCTCTGCTAGACTACCATGAGGATGGTGGGACCCCATATATGATTTTCTTTAAGGGT
GGTTTAGAAATGGAAAAATGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNY
G...S.TEGNIDDSLIGGNAS..GP.GEGTE..VITGVDIVMNHHLQET.F..EAYKKYIKD.MKSIK.KLE..RPER.KPFMT..AE.IKHILAN.KNY
Retrocopy
GEDGSKTEGNIDDSLIGGNASTKGPKGEGTENIVITGVDIVMNHHLQETAFIEEAYKKYIKDDMKSIKSKLEALRPERRKPFMTEVAEKIKHILANLKNY


Parental protein
QFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC
.FFIGENMNPDGMVALLDY.EDG.TPYMIFFK.GLEMEKC
Retrocopy
EFFIGENMNPDGMVALLDYHEDGGTPYMIFFKGGLEMEKC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide