RetrogeneDB ID:
retro_mputfur_300
Organism:
Location:
GL896902.1:12674301-12674996 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.94 %
Coverage:
71.47 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_300
ACCACTGGTGTCTTTACTACCAAGGCTCAGGCTCATTTGAGGGGTATGGCCAAGATGGTT
ATCACTTCTGCCCCTTCCAATGATGGCCCATGTTTGTGATGGACATGAGCCATGAGAAGT
ATTACAACTCCCTCGAAACTGTCAGCAATGCCTCCTGTACCAAAAACTGCCTGGGCCCTC
TGTCCAAGATCACTCATGACAACTTGGGCAACATGAAAAGACTAATGACACAGTCCTTGC
CATCAATGCCACAAGAAGACCATGGCTGGCGCCACTGAGAAGCTGTGGCGTGATGGCTGA
GGGGATGCCCAGAACATCATCCTTGCTTCTACAGCCAAGGATGGAGGCAAGGTTATCCGG
AAGCTGAATGGGAAGCTCCCCGGTTAGGCTTTCCATGTCCTCACCCCCAACTCACCAGTC
ATGGATCTCACCTGCTGCCTAAAGCAAGCTGCCAATTATGATAATATCAAGAAGATGGTG
AAGCAGGCATTGGAGGACCCCGTCAAGGCATCCTGGGTTCCAGTGAGGACCAGGCTGTCC
ACTGCAACTACAATAATAGCACCCACTCTTCCACCTTCAGTGCTGGGAGTGACACTGCCC
TCAATGACCACTGTGTCAAGCCCATTTCCTGGTATGATAATGAATTTGGCTACAGCAACC
AGGTGGTAGATCTGGTCCACATGGACTCTAAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STGVFTTMEKAGAHLKGGAKRVIISAPSADAP-MFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMT-TVHAITATQ-KTVDGPSGK
.TGVFTT..KA.AHL.G.AK.VI.SAPS.D.P.MFVM...HEKY.NSL..VSNASCT.NCL.PL.K..HDN.G....LMT.TV.AI.AT..KT..G...K
Retrocopy
TTGVFTT--KAQAHLRGMAKMVITSAPSNDGP/MFVMDMSHEKYYNSLETVSNASCTKNCLGPLSKITHDNLGNMKRLMT/TVLAINATR/KTMAGATEK


Parental protein
LWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLK-GILGYTEDQVVSCDFNSDTHSS
LWRDG.G.AQNII.AST..AK..GKVI..LNGKL.G.AF.V.TPN..V.DLTC.L..AA.YD.IKK.VKQA.E.P.K.GILG..EDQ.V.C..N..THSS
Retrocopy
LWRDG*GDAQNIILAST--AKDGGKVIRKLNGKLPG*AFHVLTPNSPVMDLTCCLKQAANYDNIKKMVKQALEDPVK/GILGSSEDQAVHCNYNNSTHSS


Parental protein
TFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
TF.AG...ALNDH.VK.ISWYDNEFGYSN.VVDL.VHM.SKE
Retrocopy
TFSAGSDTALNDHCVKPISWYDNEFGYSNQVVDL-VHMDSKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide