RetrogeneDB ID:
retro_mputfur_303
Organism:
Location:
GL896902.1:16615681-16616084 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.36 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL27
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]

Genomic region (view in browser)





>retro_mputfur_303
ATGGGCAAGTTCACAGAACCTGGGAAGGTGGTGCTGGTCCTGGCCAGACACTGCTCCAGA
TGCAAAGTGGTCATTGTGAAGAACATTGATGATGGCATTTCAGACCATCCCTACAGCTAT
GCTGTGGTGGCTGGAACTGACCACTATCCCTGCAAAGTGACAGCTGCCATGGGCAAGAAG
AAAATTGTCAAGAGGTCAAAGATCAATTTTTTGTGAAAATTTATAACTATAATCACCTCA
TGCCCACAAGGTACTCTGTCAATATCCCCTTGGACAAAACTGTCATCAACAAGGATGTCT
TCAGAGACCTTGCTCTTAAATCCAAGGCTTGACAAGAAAAGATCAAATTCAAGGACAGTA
CAAGACTGGCAAGAGCAAGTGGTTCTTCCAGAAGCTGTGGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKI-KSFVKVYNYNHLMPTRYSVDIPLDKTVVNKD
MGKF..PGKVVLVLA...S..K.VIVKNIDDG.SD.PYS.A.VAG.D.YP.KVTAAMGKKKI.KRSKI...FVK.YNYNHLMPTRYSV.IPLDKTV.NKD
Retrocopy
MGKFTEPGKVVLVLARHCSRCKVVIVKNIDDGISDHPYSYAVVAGTDHYPCKVTAAMGKKKIVKRSKI/QFFVKIYNYNHLMPTRYSVNIPLDKTVINKD


Parental protein
VFRDPALKRKARREAKVKFEE-RYKTGKNKWFFQKLRF
VFRD.ALK.KA..E.K.KF....YKTGK.KWFFQKL.F
Retrocopy
VFRDLALKSKA*QE-KIKFKD/QYKTGKSKWFFQKLWF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide