RetrogeneDB ID:
retro_mputfur_304
Organism:
Location:
GL896902.1:19673048-19673397 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.09 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPLP1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]

Genomic region (view in browser)





>retro_mputfur_304
ATGGCTTCCCTCTGGGAGCACATCATCGTGGACTCAGCCCTCATCCTACACAACAATGAG
GTGCTGGTCATGGAGGACAGTATCAATGCCCCCATTAAAGCAGTGGGTGTAAAAGTTGCA
CCTTTCTGACCCTGCTGGTTTACAAAGGCCCTGGCCAATGTCAACGTGGGGTGAGGGGGG
GCAGTCTGCAATGTTGGGGCTGGTGGTTCCTGCCCCAGCAGTTGGTGCTGCCCCAGCAGG
AGATCCTGCTCCCTCCACCATTGCTGCCCCAGCTGTGGAGAAGAAAGTGAAAGCAAAGAA
AGAAGAATCAGAGGAGTATGATGATGACATGGCCTTTGGTCTTTCTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIG--SLICNVGAGG-PAPAAGAAPAGGPAPSTAAAPAEEKKVEAK
MAS..E.....SALILH..EV.V.ED.INA.IKA.GV.V.PF.P..F.KALANVN.G.....CNVGAGG.PAPA.GAAPAG.PAPST.AAPA.EKKV.AK
Retrocopy
MASLWEHIIVDSALILHNNEVLVMEDSINAPIKAVGVKVAPF*PCWFTKALANVNVG*GGAVCNVGAGG\PAPAVGAAPAGDPAPSTIAAPAVEKKVKAK


Parental protein
KEESEESDDDMGFGLFD
KEESEE.DDDM.FGL.D
Retrocopy
KEESEEYDDDMAFGLSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide