RetrogeneDB ID:
retro_mputfur_307
Organism:
Location:
GL896902.1:25203796-25204795 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.89 %
Coverage:
82.63 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
Ggta1
Parental gene aliases:
No gene alias available
Parental gene description:
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]

Genomic region (view in browser)





>retro_mputfur_307
TGGTACTACCAAAACCCAGAAGTTGGTAACAGCATAAGTCAGAAGCACTGGTGGTTTCCG
AGTTGGTTTAACAATGGGACCCACATTTACCAAGAAGTGGAGGACACAGATGAAGATGAA
CGAGAGGAAAACAACGGAGAGCTTCAGCTATCAGACTGGTTTAACCCACAGAAACGTCCA
GAGGTGGTGACGGTGACCAGATGGAAGGCGCTGGTCGTGTAGGAAGGCACTTACAACAGC
ACCATCCTAGAAAATTATTATGCCAAGCAGAAAATTACCGTGGGTTTGACAGTTTTTGCT
GTTGGAAGATACATTGAGCATTACTTGGAGGAGTTCTTAGTATCTGCCAATAGGTACTTC
ATGGTTGGCCACAAAGTCATAGTTTACATCATGGTGGACGACGTCTCCAGGATGCCCTTG
ATGGAGCTGGGTCCTCTGCGTTCCTTCAAAGTGTTTGAGATCAAGCCTGAGAAGAGGTGG
CAGGACATCAGCATGATGTGTATGAAAACCATTGGGGAGCACATTGTGGCCCACATCCAA
CATGAAGTGGACTTCCTCTTCTGCATGGACGTGGACCAGGTCTTCCAAGGTAGCTTTGGA
GTGGAGACGCTGGGCCACTCAGTGGCTCAGCTGCAGGCCTGGTGGTACAAGGCAGACCCC
GACAAGTTTACCTACGAGAGGCGGAAGGAGTCTGCAGCCTACATTCCATTCGGCCAAGGG
GATTTTTATTACCACGCAGCCATTTTGGGAGGCACACCCATTCAGGTCCTAAACATCACC
CAGGAGTGCTTAAAGGGAATCCTCCAGGACAAGAAAAATGACATAGAAGCCAAGTGGCAT
GATGAAAGCCACCTAAATAAGTATTTCCTTCTCAACAAATCCACTAAAATCTTATCCCCA
GAATACTGCTGGGATTATCACATAGGCCTGCCTTCGGATATTAAGACTGTCAAGATATCT
TGGCAGACAAAAGAGTATAATTTGGTTAGAAATAATATC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YHSKNPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVTGWKAPVVWEGTYNSTILENYYAKQKITVGLTVFA
....NPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVT.WKA.VV.EGTYNSTILENYYAKQKITVGLTVFA
Retrocopy
WYYQNPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVTRWKALVV*EGTYNSTILENYYAKQKITVGLTVFA


Parental protein
VGRYIEHYLEEFLVSANRYFMVGHKVIFYIMVDDVSRIPLIELGPLRSFKVFEIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDSFG
VGRYIEHYLEEFLVSANRYFMVGHKVI.YIMVDDVSR.PL.ELGPLRSFKVFEIKPEKRWQDISMM.MKTIGEHIVAHIQHEVDFLFCMDVDQVFQ.SFG
Retrocopy
VGRYIEHYLEEFLVSANRYFMVGHKVIVYIMVDDVSRMPLMELGPLRSFKVFEIKPEKRWQDISMMCMKTIGEHIVAHIQHEVDFLFCMDVDQVFQGSFG


Parental protein
VETLGHSVAQLQAWWYKADPDEFTYERRKESAAYIPFGQGDFYYHAAIFGGTPIQVLNITQECFKGILQDKKNDIEAEWHDESHLNKYFLLNKPTKILSP
VETLGHSVAQLQAWWYKADPD.FTYERRKESAAYIPFGQGDFYYHAAI.GGTPIQVLNITQEC.KGILQDKKNDIEA.WHDESHLNKYFLLNK.TKILSP
Retrocopy
VETLGHSVAQLQAWWYKADPDKFTYERRKESAAYIPFGQGDFYYHAAILGGTPIQVLNITQECLKGILQDKKNDIEAKWHDESHLNKYFLLNKSTKILSP


Parental protein
EYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI
EYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI
Retrocopy
EYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide