RetrogeneDB ID:
retro_mputfur_309
Organism:
Location:
GL896902.1:29997152-29999067 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.87 %
Coverage:
98.76 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_309
ATTGACCTTGGCACCACCTACTCCTGCGTGGGTGTCTTCCAGCACAGGAAAGTGGAAATA
ATTGCCAATGATCAGGGAAACTGGACCACCCCAAGTTATGTCACCTTCACGGACACCGAA
CGATTGATCGGTGATGCTGCCAAGAACCAAGTTGCGATGAACCCCACCAACACAGTTTTT
GATGCCAAACGCCTGATTGGACGGAGATTTTATGATGCTGTTGTCCAGTCTGATATGAAG
CATTGGCCTTTCATGGTGGTCAATGATGCTGGCAGGCGCAAGGTCCAAGTAGAATACAAG
GGAGAGAGAAAAAGCTTTTATCCAGAGGAGGTGTCTTCTATGGTTTTGACAAAAATGAAG
GAAATCGCAGAGGCTTATCTTGGGAAGACCGTTACCAATGCAGTTGTCACAGTACCTGCG
TACTTCAATGATTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAT
GTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCTTAGACAAAAAA
GTTGGAGATGAAAGGAATGTGCTGATCTTTGACTTAGGAGGTGGCACTTTTGATGTGTCA
ATCCTTACTATTGAAGATGGGATCTTTGAGGTTAAGTCCACAGCTGGAGACACCCACTTA
GGTGGAGAAGACTTTGACAACCGAATGGTCAACCATTTTATTGCAGAGTTCAAGCGCAAA
CATAAGAAAGATATCAGTGAAAACAAGAGGGCAGTTCGTCGTCTCCGTACTGCTTGTGAA
CGTGCTAAGTGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTAT
GATGGAATCGACTTCTATACCTCTATCACTCGTGCCCGGTTTGAAGAATTAAATGCTGAC
CTGTTCCGTGGCGCCCTGGACCCTGTAGAGAAAGCTCTTCGGGATGCCAAGTTAGACAAG
GTCTCAGATCCATGATATTGTTCTGGTGGGTGGTTCTACCCATATCCCCAAGATTCAGAA
ACTTCTCCAAGATTTCTTCAATGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAAGC
TGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTTTCTGGAGACAAATCTGAAAATGT
TCAAGATTTGCTGCTGTTGGATGTCACTCCACTTTCTCTTGGCATTGAAACTGCTGGAGG
AGTCATGACTGTTATTATCAAGCGTAATACTACCATTCCTACCAAACAGACACAGACCTT
CACTACCTACTCCGACAACCAGCCTGGTGTGCTTATTCAGGTGTATTAAGGTGAGCATGC
CATGACCAAGGACAACAATCTACTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCTCC
TCGTGGTGTCCCTCAGATTGAGGTCACTTTCGATATTGATGCTAATGGTATCCTCAATGT
CTCTGCCATGGATAAGAGCACAGGAAAAGAGAACAAGATTACCATCACTAATGATAAGGG
CCGCTTGAGCAAGGAAGATATTGAGCGCATGGTCCAGGAAGCTGAGAAGTACAAAGCTGA
AGATGAGAAACAGCGGGACAAGGTGTCTTCCAAGAATTCATTGGAGTCTTATGCATTCAA
CATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGACAAGATAAATGATGAAGACAAACA
AAAGATTCTTGACAAGTGCAATGAAATCATCAACTGGCTTGATAAGAACCAGACTGCAGA
GAAGGAAGAATTTGAACACCAGCAGAAAGAGTTGGAGAAAGTCTGCAACCCCATCAGCAC
CAAGCTGTACCAGAGTGCAGGGGGCATGCCAGGAGGAATGCCTGGAGGCTTCCCTGATGG
TGGAGCTCCTCCCTCTGGTGGTGCCTTCTCTGGGCCCACCATTGAAGAGGTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYK
IDLGTTYSCVGVFQH.KVEIIANDQGN.TTPSYV.FTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRF.DAVVQSDMKHWPFMVVNDAGR.KVQVEYK
Retrocopy
IDLGTTYSCVGVFQHRKVEIIANDQGNWTTPSYVTFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFYDAVVQSDMKHWPFMVVNDAGRRKVQVEYK


Parental protein
GETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVS
GE.KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVG.ERNVLIFDLGGGTFDVS
Retrocopy
GERKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGDERNVLIFDLGGGTFDVS


Parental protein
ILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD
ILTIEDGIFEVKSTAGD.HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLY.GIDFYTSITRARFEELNAD
Retrocopy
ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYDGIDFYTSITRARFEELNAD


Parental protein
LFRGTLDPVEKALRDAKLDK-SQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAG
LFRG.LDPVEKALRDAKLDK.SQIHDIVLVGGST.IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAG
Retrocopy
LFRGALDPVEKALRDAKLDK\SQIHDIVLVGGSTHIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAG


Parental protein
GVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDK
GVMTV.IKRNTTIPTKQTQTFTTYSDNQPGVLIQVY.GE.AMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA.DKSTGKENKITITNDK
Retrocopy
GVMTVIIKRNTTIPTKQTQTFTTYSDNQPGVLIQVY*GEHAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAMDKSTGKENKITITNDK


Parental protein
GRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPII
GRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQ.KINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPI.
Retrocopy
GRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQDKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIS


Parental protein
TKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
TKLYQSAGGMPGGMPGGFP.GGAPPSGGA.SGPTIEEVD
Retrocopy
TKLYQSAGGMPGGMPGGFPDGGAPPSGGAFSGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide