RetrogeneDB ID:
retro_mputfur_310
Organism:
Location:
GL896902.1:32119296-32119735 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.33 %
Coverage:
92.5 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_310
ATGACCAACTCAAAGGGCAAGAGCAGAGGCCCCACTGATTTTTCTCTGGCCCTTATAGAA
AACATGAAGTTGTTCCTTTGGCCACATACATATGAATCTACAAGAAAGGGGATATGGTGG
ACATCAAGGGAATGGGTACTGTTCAAAATGCAAGGCCCCACAGCTGTTAGCACAGCAAAA
CAAAAGTCTACAGTGTTACCCAGCATGTTGTTGGCATCATTGTAAACAGCAAGTTAAGGG
TAAAACTCTGGCCAAGAGAGTTAATGTGCGTGGTGGGCACACAGAGCACTCTAAGAGCCA
AGGTAGCTTCAAGACATGAATGATGAGAAATGATCAGAAAAAGAAAGAAGCCAAAAGGAA
ATCTTCTTGGGTTCATTGGCAGCACCAGCCTACTCCACCCAGAAAACCACACTTTACGAG
AACCAATAGAAAGGAACCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYM-FSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVN-KQVKGKILAKRINVRIEHIKH
MTN.KGK.RG.....FS.P.RKH.VVPLATY..IYKKGD.VDIKGMGTVQ...PH.C.H.KT..VY.VTQH.VGI.VN..QVKGK.LAKR.NVR..H..H
Retrocopy
MTNSKGKSRGPTDF/FSGPYRKHEVVPLATYI*IYKKGDMVDIKGMGTVQNARPHSC*HSKT-KVYSVTQHVVGIIVN/QQVKGKTLAKRVNVRGGHTEH


Parental protein
SKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEP
SKS..SF......NDQKKKEAK.K..WV....QP.PPR..HF.RTN.KEP
Retrocopy
SKSQGSFKT*MMRNDQKKKEAKRKSSWVHWQHQPTPPRKPHFTRTNRKEP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide