RetrogeneDB ID:
retro_mputfur_311
Organism:
Location:
GL896902.1:32390699-32391177 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.84 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_311
ATGGCCACAACAAAGGGGAAGAGGAGAGGAACTACCTCTATGTTCTCCCAGCCTTTTACG
AAACATGGAGCTGTTCCTTTGGCCACGCACATGTGAATCTACAAGAAAGGTGATATTGTG
GACATCAAGAGAATGGGCATTGTTCGAGGAGGAACACCCCGCAAATATTAGCACGGCAAA
ACTGGAAGAGTCCACAGTATTACCCAGCCTGCTGTTGGCAGTGTTGTAAACAAACAAGTT
AAGGGCAAGATTCTGGCCAGAAGTATCAATGTAAGTATTGAGCATATTAAGCCCTCAAAG
AGCCAAGACAGCTTCCTGAAGCACATGAAGGAAAATGAGAAGAAAAAGAAGGAAGCCAAA
GAGAAAGCTCTGGAGGTCAGTGGAAGTGCCAGCCTGCCCACCCAGAGAAGCACACTTTGG
GGAAACTGATGGAAAGAAACCTGAGCTGCTGGAACCTATTTCCCATGAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
M..TKGKRRGT..MFS.PF.KHG.VPLAT.M.IYKKGDIVDIK.MG.V..G.P.K..HGKTGRV...TQ.AVG.VVNKQVKGKILA..INV.IEHIK.SK
Retrocopy
MATTKGKRRGTTSMFSQPFTKHGAVPLATHM*IYKKGDIVDIKRMGIVRGGTPRKY*HGKTGRVHSITQPAVGSVVNKQVKGKILARSINVSIEHIKPSK


Parental protein
SRDSFLKRVKENDQKKKEAKEKGTWV-QLKRQPA-PPREAHFVRTNGKEPELLEPIPYEFMA
S.DSFLK..KEN..KKKEAKEK...V.Q.K.QPA.PPREAHF..T.GK.PELLEPI..EFMA
Retrocopy
SQDSFLKHMKENEKKKKEAKEKALEV/QWKCQPA/PPREAHFGETDGKKPELLEPISHEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide