RetrogeneDB ID:
retro_mputfur_313
Organism:
Location:
GL896903.1:2969081-2969558 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.97 %
Coverage:
63.6 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TM2D3
Parental gene aliases:
No gene alias available
Parental gene description:
TM2 domain containing 3 [Source:HGNC Symbol;Acc:24128]

Genomic region (view in browser)





>retro_mputfur_313
ACTGAGCCGCTGGCTCAGTCAATAAAGGATCCGGGCCCAACACGTACTTTCACAGTAGTT
CCCAGGGCAGCAGAAAGTACTGATATCCCACCTTATGTGATGAAGTGTCCAAGTAATGGT
TTGTGTAGCAAACTTCCTGCAGACTGTGTAGAATGCAAGACAAATTTCTCCTGTGTCTAT
GGGAAACCTGTCACCTTTGACTGCACAGTCAAACCTTCTGTTACCTGTGTTGATCAAGAC
TTCAAATCCCAAAAGAACTTCATCATCAACATGACTTGCAGGTTTTGCTGGCAGCTTCCA
GAAATGGATTATGAGTGTTCCATTTCCACCAGCTGCATGACGGTGTCCTATCCCCGGCAG
CGTTACATGGCCAACTGCACCGTGCGGGACCACATTTATTGCCTGGGTAACTGTACTTTT
CCAAAGATGCTGTACTGCAACTGGACTGGAGGTAATAAGTGGTCTACTGCTCTGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SQPLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTVKPSVTCVDQDFKSQKNFIINMTCRFCWQLP
..PLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTVKPSVTCVDQDFKSQKNFIINMTCRFCWQLP
Retrocopy
TEPLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTVKPSVTCVDQDFKSQKNFIINMTCRFCWQLP


Parental protein
ETDYECSNSTSCMTVSCPRQRYMANCTVRDHIHCLGNRTFPKMLYCNWTGGYKWSTALA
E.DYECS.STSCMTVS.PRQRYMANCTVRDHI.CLGN.TFPKMLYCNWTGG.KWSTALA
Retrocopy
EMDYECSISTSCMTVSYPRQRYMANCTVRDHIYCLGNCTFPKMLYCNWTGGNKWSTALA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide