RetrogeneDB ID:
retro_mputfur_316
Organism:
Location:
GL896903.1:5921816-5922225 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.75 %
Coverage:
51.52 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS3A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]

Genomic region (view in browser)





>retro_mputfur_316
ACTACTGATGGTTATTTGTTTTGTCCATTTCGTGTCAGTTTTACTAAAAAAATGCAATAA
TCAGATTCGGAAGACCTCTTATGCTCAGTACCAACAGGTCCGCCAAATTCAGAAAAAGAT
GATGGAGACTGTGACCTGAGTGATTCAGACAAATGACTTGAAAGAAGTGGTCAATAAACT
GATTCCAGACAGCACTGGAAAAGATACAGAAAAAGCTTGTCAGTCTATTTATCCACTCTA
TGATGTCTTGGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAACTGGGAAAGCT
CATGGAGATTCATGGTGCAGGTAGTAGTTCTGGAAAAGCTACGGGGAATGAGACCAGTAC
TAAAGCTGAACGAGGGGATGGATATGAGCCACCAGTCCAAGAATCTGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TTDGYLLRLFCVGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK
TTDGYL...F.V.FTKK..NNQIRKTSYAQ.QQVRQI.KKMME..T...QTNDLKEVVNKLIPDS.GKD.EKACQSIYPL.DV.VRKVKMLKKPKFELGK
Retrocopy
TTDGYLFCPFRVSFTKKM\NNQIRKTSYAQYQQVRQIQKKMMETVT*VIQTNDLKEVVNKLIPDSTGKDTEKACQSIYPLYDVLVRKVKMLKKPKFELGK


Parental protein
LMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV
LME.HG.GSSSGKATG.ET..K.ER.DGYEPPVQESV
Retrocopy
LMEIHGAGSSSGKATGNETSTKAERGDGYEPPVQESV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide