RetrogeneDB ID:
retro_mputfur_322
Organism:
Location:
GL896903.1:17540218-17540611 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.32 %
Coverage:
81.37 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS16
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]

Genomic region (view in browser)





>retro_mputfur_322
AAGAAGACGATCACAGCTGTGGTGCACTGCAAACAGGGCAGTGGCCTCATCAAGATGAAT
GGACAACCCCTGGAGATGATCATGCCAGGCATGCTGCAGTACAGCTCCTGGAACCTGTTT
GTGTCTGGGCAAGGAGCGATTTGCTGTGGACATCCGAGTCCAAGGGAAGGGTGGTGGTCA
CGTGACTCAGATTTACACAATCACAATTGGCCACTCCATCTCCAAAGCCCTGGTGGCTAT
TATCAGAAATACAAGGATGAGGCTGTGGAGAAGGAGATCAAAGACCTCCGCGTTCAGTAC
AACCAGACCCTGCTGGTAGCTGTTTCGCAGTGTTGCGAATCCAAAAAGTTTGAGGGTCCT
GGTACCTGTGCGTGCTACCAGAAATCCTACCGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQY-KLLEPV-LLLGKERFAGVDIRVRVKGGGHVAQIYAIR--QSISKALVA-YYQKYVDEASKKEIKD
KKT.TAV.HCK.G.GLIK.NG.PLEMI.P..LQY..LLEPV.L.LGKERFA.VDIRV..KGGGHV.QIY.I....SISKALVA.YYQKY.DEA..KEIKD
Retrocopy
KKTITAVVHCKQGSGLIKMNGQPLEMIMPGMLQY/QLLEPV/LCLGKERFA-VDIRVQGKGGGHVTQIYTITIGHSISKALVA/YYQKYKDEAVEKEIKD


Parental protein
ILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
...QY..TLLVA....CESKKF.GPG..A.YQKSYR
Retrocopy
LRVQYNQTLLVAVSQCCESKKFEGPGTCACYQKSYR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide