RetrogeneDB ID:
retro_mputfur_328
Organism:
Location:
GL896903.1:6137856-6138579 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.78 %
Coverage:
98.77 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
C14orf166
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169]

Genomic region (view in browser)





>retro_mputfur_328
ATGTTCCGACGCAAGCTGACGGCCCTTGACTACCACAATCTGGCTGGTTTCAACTGCAAA
GATGAAACCTAATTTAGAAACTTTATTGCTTGGCTTGAAGACCAGAAAATCAGACACTAC
AAAATTGAAGACAGAGGTAATTTAAGAAACATCCACAGCAGTGACTGGCCCAAGTTCTTT
GAAAAGTATCTCAAAGATGTTAACTGTCCTTTCAAGATTCAAGATCGACAAGAAGCAATT
GACTGGCTTCTTGGTTTAGCTGTTAGACTTGAATATGGAGATAATGCTGAAAAATACAAG
GACTTGGTATCTGATAACACAAAAAATGCTGACAATGCAGCTAAAAATGCAGAGTCATTG
ATCAATTTGGATGTAAATAATCCTGATTTTAAGGCTGGTGTAATGGCTTTGGCTAACCTT
CTTCAAATTCAGCGTCATGATGATTACCTGGTAATGCTTAAGGCAATTAGCATTTTGGTC
CAGGAGCACCTGACACAGGATGCAGTTGCTAAAGCAAATCAAACGAAAGAGGGCTTGCCT
GTTGTTTTAGACAAACATATTCTTGGTTTTGAGACAGGAGATGCAGTTCTTAATGAAGCT
GCTCAAATTCTACGATTGCTGCATATAGAAGAGCTCAGAGAGCTACAGACAAGAATTAAT
GAAGCCATAGTAGCTGTTCAGGCAATTATTGCTGATCCAAAGACAAAGGGGAAAGTTGGA
AGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYK
MFRRKLTALDYHN.AGFNCKDET.FRNFI.WLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYK
Retrocopy
MFRRKLTALDYHNLAGFNCKDET*FRNFIAWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYK


Parental protein
DLVPDNTKNADNAAKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEA
DLV.DNTKNADNAAKNAE.LINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAI.ILVQE.LTQDAVAKANQTKEGLPV.LDKHILGF.TGDAVLNEA
Retrocopy
DLVSDNTKNADNAAKNAESLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAISILVQEHLTQDAVAKANQTKEGLPVVLDKHILGFETGDAVLNEA


Parental protein
AQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGK
AQILRLLHIEELRELQT.INEAIVAVQAIIADPKT....G.
Retrocopy
AQILRLLHIEELRELQTRINEAIVAVQAIIADPKTKGKVGR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide