RetrogeneDB ID:
retro_mputfur_333
Organism:
Location:
GL896903.1:23933022-23933483 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
68.35 %
Coverage:
98.08 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_333
AAGGCTAAGAAGGAAGCTCCTGCCCCTCCCAAATCCAAAGCCAAAGCCAAAGAAAAGGCT
TTGAGGCCAAGAAAGTGGCACTGAAAGGTGTCCAAAGTCACACAAAAAAAGAAGATCTGC
ATGTCACACACATTCCAATGACCCAAGACACAGTATCTCTGAAGATACCCTAAATACCCT
CGAAAGAGCGCCCCCAGGAGAAGCAAGCTTGACCGCTATGCCATCAAGTTCCCCCGACCA
CTTAGTCAGCCATGAAGAAAACAGAAGACAACACCACACTTGCGTTCACTGTGGATGTCA
AGACCAACAAGCACCAGATCAAACAGGCTGTGAAGAAGCTCTCCGACACTGATGTGGCCA
AGGTCAACACCATGATCAGGTTTGATGCAGGTAAGGAAGCATATGTTCAGCTGGCTCCTC
ACTGTGATGCTCTGGATGTTGCCAACAACATCAGGATCATC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KAKKE--APAPPKAEAKAKALK-AKKAVLKGVHSH-KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPL-TTESAMKKIEDNNTLVF
KAKKE..AP.........KAL..AKK..LKGV.SH..KKKI..S.TF..PKT..L.R.PKYPRKSAPRR.KLD.YA.IKFP..TT.SAMKK.EDN.TL.F
Retrocopy
KAKKEAPAPXXXXXXXXXKALR/AKKVALKGVQSH\QKKKICMSHTFQ*PKTQYL*RYPKYPRKSAPRRSKLDRYA-IKFPR/TT*SAMKKTEDNTTLAF


Parental protein
IVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
.VDVK.NKHQIKQAVKKL.D.DVAKVNT.IR.D..K.AYV.LAP..DALDVAN.I.II
Retrocopy
TVDVKTNKHQIKQAVKKLSDTDVAKVNTMIRFDAGKEAYVQLAPHCDALDVANNIRII


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide