RetrogeneDB ID:
retro_mputfur_338
Organism:
Location:
GL896904.1:13885846-13886592 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.5 %
Coverage:
95.04 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
PSMA1
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530]

Genomic region (view in browser)





>retro_mputfur_338
GACAACAATGTCACAGTTTGGAGCCCTCAGGGCAGGATTCATCAGATTGAGTATGCAATG
GAAGCTGTCAAGCAAGGTTCGGCTGTGGTTGGTCTGAAATCAAAAACCCATGCAATGTTG
GTTGCACTGAAGAGAGCACAGTCAGAGCTTACAGCTCATCAGAAAATAATTCTCCATGTT
AACAACCATATTGGTATCTCAACTGTGGGACTTACTTCTGATGCCGGACTGTTATGTAAT
TTTATGTGCCAGAAGTGTTTGGATTCTGGGTTTGTATTTGACAGACATGTTCCTGGGTCT
CATCTTGTATCTCTAATTGGAAGTAAGACCCAAACACCAACACAATGATATGGCTGGAGA
CCATATGGTGTTGGACTGCTTATTGCTGGTTATGATGATACGGGCCCTCACATTTTCCAA
ACCTGTCCATCTGCCAACTATTTTGACTGTAGAGCCATGTCCATGGCAGCCTGCTCTCAA
TCATCTCATACTTACTTGGAGAGACATATGTCTGGGTTTATGGAGTGCAATTTGAATGAA
CTGATTAAACATGGTCTACATGTCTTACGAGAAACACTTCCTGCAGAATAGTACCTAACT
ACAAAGAAAGTCTCCATTGGAACTGTTGGTAAAGACTTGAGTTTGCAATCTATGATTATG
ATAATGTTGATGATGATGTGTCTCTGTTCCTGGAAGGACTTGAAAAAAGACCACAGCCTG
CTCAACCTGCTAATGAACCAACAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS
DN.VTVWSPQGRIHQIEYAMEAVKQGSA.VGLKSKTHA.LVALKRAQSEL.AHQK.ILHV.NHIGIS..GLT.DA.LLCNFM.Q.CLDS.FVFDR..P.S
Retrocopy
DNNVTVWSPQGRIHQIEYAMEAVKQGSAVVGLKSKTHAMLVALKRAQSELTAHQKIILHVNNHIGISTVGLTSDAGLLCNFMCQKCLDSGFVFDRHVPGS


Parental protein
RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSGFMECNLNELVKHGLRALRETLPAEQDLT
.LVSLIGSKTQ.PTQ.YG.RPYGVGLLIAGYDD.GPHIFQTCPSANYFDCRAMS..A.SQS..TYLERHMSGFMECNLNEL.KHGL..LRETLPAE..LT
Retrocopy
HLVSLIGSKTQTPTQ*YGWRPYGVGLLIAGYDDTGPHIFQTCPSANYFDCRAMSMAACSQSSHTYLERHMSGFMECNLNELIKHGLHVLRETLPAE*YLT


Parental protein
TKNVSIGIVGKD-LEFTIYD----DDDVSPFLEGLEERPQRKAQPAQPADEPAE
TK.VSIG.VGKD.LEF.IYD....DDDVS.FLEGLE.RPQ....PAQPA.EP.E
Retrocopy
TKKVSIGTVGKD/LEFAIYDYDNVDDDVSLFLEGLEKRPQ----PAQPANEPTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide