RetrogeneDB ID:
retro_mputfur_34
Organism:
Location:
GL896902.1:20258646-20259609 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.01 %
Coverage:
98.75 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_34
ATGTCTAAGTCAGAGTCTCCCAAAGAGCCTGAACAGCTGCGGAAGCTCTTCATCGGAGGT
CTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACACTT
ATGGACTGTGTGGTAATGAGAGATCCGAACACCAAACGCTCCAGAGGCTTTGGGTTTGTC
ACATATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCACACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCTGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCC
CACTTAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCAT
CTAAGAGATTATTTCGAACAGTATGGGAAAATCGAAGTGATTGAGATCATGACTGACCAA
GGCAGTGGCAAAAAGAGGGGTTTTGCTTTTGTAACATTTGATGACCATGATTCTGTAGAC
AAGATTGTCATTCAAAAATACCATACTGTGAATGGCCACAGCTGTGAAGTAAGGAAAGCG
CTCTCTAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGA
AACTTGGGTGGTGGTCGTGGAGGTGGTTTTGGTGGGAATGACAACTTTGGTCGCGGAGGA
AACTTCAGTGGTCGAGGTGGCTTTGGTGGCCGTCGAGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAACGGATTTGGTAATGATGGAAGCAACTTTGGAGGTGGCGGAAGCTAT
AATGATTTTGGCAATTACAACCATCAATCCTCAAATTCTGGACCCATGAAAGGAGGCAAT
TTTGGAGGCAGAAGCTCTGGCCCTTATGGTGGTGGAGGCCAATACTTCGCCAAACCGCGA
AACCAAGGTGGCTATGGTGGTTCCAGCAGCAGCAGCAGCTATGGCAGTGGCAGAAGGTTT
TAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCGVMRDPNTKRSGGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL.DC.VMRDPNTKRS.GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA
Retrocopy
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA


Parental protein
HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMATASSSQRGRSGSG
HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD.GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH.CEVRKALSKQEMA.ASSSQRGRSGSG
Retrocopy
HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHSCEVRKALSKQEMASASSSQRGRSGSG


Parental protein
NFGGGCGGGFGGNDHFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGYGNQGSGYGGSGSYDSYNNGGGRGGYDGGRGQYFAKP
N.GGG.GGGFGGND.FGRGGNFSGRGGFGG.RGGGGYGGSGDGYNGFGNDG...GGG..Y....GN.......SG.....N.GG...G..GG.GQYFAKP
Retrocopy
NLGGGRGGGFGGNDNFGRGGNFSGRGGFGGRRGGGGYGGSGDGYNGFGNDGSNFGGGGSYN-DFGNYNHQSSNSGPMKGGNFGGRSSGPYGGGGQYFAKP


Parental protein
RNQGGYGGSSSSSSYGS
RNQGGYGGSSSSSSYGS
Retrocopy
RNQGGYGGSSSSSSYGS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide