RetrogeneDB ID:
retro_mputfur_342
Organism:
Location:
GL896904.1:19285494-19286264 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.12 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
UBE2Z
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2Z [Source:HGNC Symbol;Acc:25847]

Genomic region (view in browser)





>retro_mputfur_342
CCGCAGTGTCTACTTCGGATCAAGCGGGATATCATGTCCATTTATAAGGAGCCTCCTCCA
GGAATGTTCGTTGTACCTGATACTGTTGACATGACTAAGATTCATGCATTGATCACAGGC
CCATTTGACACCCCTTATGAAGGGAGTTTCTTCCTGTTCGTGTTTCGGTGTCCGCCCGAC
TATCCCATCCACCCGTCTCGGGTCAAACTGATGACAACGGGCAATAACACAGTGAGGTTT
AACCCCAACTTCTACCGCAATGGGAAAGTCTGCTTGAGTATTCTAGGTACGTGGGCTGGC
CCCGCCTGGAGCCCAGCCCAGAGCATCTCCTCCGTGTTGATCTCCATCCAGTCCCTAATG
ACTGAGAACCCCTATCACAATGAGCCTGGCTTTGAGCAGGAGAGACATCCAGGAGACAGC
AAAAATTACAATGAATGTATCCGGCATGAGACCATCAGAGTGGCAGTCTGTGACATGATG
GAGGAAAGTGTCCCTGCCCTGAGCCCTTACGAGGGGTGATGGAGAAGTCCTTCCTGGAGT
ATTACGTCTTCTATGAGGTGGCTTGCAAAGATCGCCTGCACCTTCAAGGCCAGACAATGC
AGGACCCTTTTGGAGAGAAGCGTGGCCACTTTGACTACCAGTCCCTCTTGATGCGCCTGG
GACTGATTCGTCAGAAAGTGCTGGAGAGGCTCCATAATGAGAACGCCGAAATGGACTCTG
ATAGCAGTTCGTCTGGGACAGAGACAGACCTGCACGGGAGCCTGAGGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PHLLLVLYRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG
P..LL...RDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEG.FFLFVFRCPPDYPIHP.RVKLMTTGNNTVRFNPNFYRNGKVCLSILGTW.G
Retrocopy
PQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGSFFLFVFRCPPDYPIHPSRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWAG


Parental protein
PAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNYNECIRHETIRVAVCDMME-GKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQT
PAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNYNECIRHETIRVAVCDMME.GKCPCPEPLRGVMEKSFLEYY.FYEVACKDRLHLQGQT
Retrocopy
PAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNYNECIRHETIRVAVCDMME/GKCPCPEPLRGVMEKSFLEYYVFYEVACKDRLHLQGQT


Parental protein
MQDPFGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
MQDPFGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
Retrocopy
MQDPFGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide