RetrogeneDB ID:
retro_mputfur_343
Organism:
Location:
GL896904.1:22361700-22362742 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.61 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_343
AGTACCCACGCCTGGAATTGGGTCGCAACCTCAGACACTCCTGCCGTCTGCCACTGCCTC
TAGACCATGGACCCCCGCAAAGTGAGCGAGCTTCAGGCTTTCATGAAAATGTGTAAGCAG
GATCCAAGCGTTCTGCACACCGAGGAAACGCGTTTCCTGCGGGAGTGGGTGGAGAGCATG
GGGGGTAAAATACCACCTGCCACTCATAAAACTAAATCAGAAGACAGTATCAAGGAAGAA
AAACCAGGTAGTAAGAAGGTGGAGGAAAACATAAAGACAGATGAACCATCAAGTGAGGAG
AGTGATCTAGAAATTGACAATGAAGGTGTGATTGAACCAGATACCGATGCCCCTCAAGAA
ATGGGAGATGAAAATGCAGAGATAACTGAGGAAATGATGGATCAAGCAAATGATAAAAAA
GTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTGTCCACA
GATGCCATCAAACTAAATCCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTC
ATCAAATTACAGAAGCCAAATGCTGCCATTAGAGACTGTGACAGAGCTATTGAAATAAAT
CCTGATTCAGTTCATCCTTATAAGTGGCACAGGAAAGCACAGAGACTTCTGGGCCATTGG
GAAGAAGCAGCACATGATCTTGCCCTTGCTTGTAAACTGGATTATGATGAAGATTCTAGT
GCAATGCTGAAAGAAGTTCAACCAAGGGCCCAGAAAATTGCTGCGGAGAAAATGTGAGCG
AAAATGTGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAAAAGGCTCAGGAAGA
ACATGAGAGAGCCCAGAGGGAGGAAGAAGCCAGACGACAATTAGGAGCTCAGTATGGCTC
TATCCCAGGTGGCTTTCCTGGGGGAATGCCCGGTAATTTTCCTGGAGGAATGCCTGGAAT
GGCAAGGGGGATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTCGTGATCC
GGAAGTTCTTACAGCCATGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEE
ST.AWN.VAT....A.CHCL.TMDPRKVSEL.AF.KMCKQDPSVLHTEE.RFLREWVESMGGKIPPATHKTKSEDSIKEEKP.SKK.EENIKTDEPSSEE
Retrocopy
STHAWNWVATSDTPAVCHCL*TMDPRKVSELQAFMKMCKQDPSVLHTEETRFLREWVESMGGKIPPATHKTKSEDSIKEEKPGSKKVEENIKTDEPSSEE


Parental protein
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDL.TDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
Retrocopy
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLSTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN


Parental protein
PDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHR-RKYERKREEREIKERIERVKKARE-EHERAQREEEARRQSGA
PDS..PYKW..KA.RLLGHWEEAAHDLALACKLDYDED.SAMLKEVQPRAQKIA.......E....ER..KE.....K..R..EHERAQREEEARRQ.GA
Retrocopy
PDSVHPYKWHRKAQRLLGHWEEAAHDLALACKLDYDEDSSAMLKEVQPRAQKIAAEK/NVSENVKSERSKKE-*KGLKRLRK/EHERAQREEEARRQLGA


Parental protein
QYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ
QYGS.PGGFPGGMPGNFPGGMPGMA.GMPGMAGMPGLNEIL.DPEVL.AMQ
Retrocopy
QYGSIPGGFPGGMPGNFPGGMPGMARGMPGMAGMPGLNEILRDPEVLTAMQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide