RetrogeneDB ID:
retro_mputfur_346
Organism:
Location:
GL896904.1:7601244-7601848 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.69 %
Coverage:
99.02 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_346
GGCACTTGGAAGCACATCCAGGAGCTGTGGCAGAAGCAGCAGTCCGACATGATGTGTTTT
CTTCTCGGGGTGCACCATGGGCAGCACTGACAGCTATCTGCGCTCCACCACCCAACCCTC
CTATCCTGGCCCGGTAAACCACACAGACTCCAGTATAAGGCCAAGCAAAGTTATGTCATC
TATCAGATTCCTGTACAGTGTGGCAGCTGCAAACGCCCAGTTCCTAGGGGTGCGACCTAT
GGCAAGCCTTTCCCTCATGGGCTTAACCAGCTCAAAGTCTGCTCGAAGCCTCAGTTGGCT
ACAGAGGAGCGAGCTGGATGCCCCTGTGGGGCTCCAAGAGTCTTGAATTCTTATTGGGTT
GGCCGAGATTCCACATACAAGTTCTTTGAGGTCATCCTCCTGGATCCAATCCACAAAGCT
ATTAGAGGAAATCCTGACACCCAGTGGATCACAGAACCAGTCTGCCCGCACGGGGAGAAG
TGAAGACTGACACGTGCAGGTCATAAGAGTGGTGGCCTTGGAAAGGTTCACAAGTTCTGC
CACAGTATTGGTGGCCCTCGCTGCAGGCATGGAGAAGATGCAGTACCCTCAGCTCCACCG
TTAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSV
G..K.IQELW.K.QSD.M.FLL.V...Q..QLSALH.......P.K..RL.YKAKQ.YVIY.I.V..G..KRPVP.GATYGKP..HG.NQLK.....Q..
Retrocopy
GTWKHIQELWQKQQSDMMCFLLGVHHGQH*QLSALHHPTLLSWPGKPHRLQYKAKQSYVIYQIPVQCGSCKRPVPRGATYGKPFPHGLNQLKVCSKPQLA


Parental protein
AEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSR-RAAWRRRNTL-Q
.EERAG..CGA.RVLNSYWVG.DSTYKFFEVIL.DP.HKAIR.NPDTQWIT.PV..H.E...LT.AG.KS.GLGK.HKF.H.IGG.R...AWRR..TL.Q
Retrocopy
TEERAGCPCGAPRVLNSYWVGRDSTYKFFEVILLDPIHKAIRGNPDTQWITEPVCPHGEK*RLTRAGHKSGGLGKVHKFCHSIGGPR/LQAWRRCSTL/Q


Parental protein
LHRY
LHRY
Retrocopy
LHRY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide