RetrogeneDB ID:
retro_mputfur_347
Organism:
Location:
GL896904.1:8848530-8848838 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.38 %
Coverage:
90.35 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_347
GCCGCCCACAGCTATTACTGGCGCCGCCTGGGCTCCACTTCCAGTAACAGCTCCTGCGGA
AGTGCACAGTGTCCCGGGGAAGCCATCCCTCACCACCCCGGTTTCCCCAAGGCCGATCGG
ATTGCTGGCGTGCAAGCTTCTTTTTGGGGAAGTCTATTCTCTCATTCGTGGCTACAACAT
TAGAGTCCCCAGAAGGCGTGGACTCTCCCCACGCCTGCAGGAGCACGATCTCCTGTGACT
TGGCTCCGGAAACCACGGGGAAGCAGCCTGGTGGCCAGCCTGGCAAAGCCAACACCGGGC
CCCAATCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ATHDYYRRRLGSTSSSSSCGSAECAGEAIPHPPGLPKAD-PGHWWASFFFGKSTVPFMATVLESPERSEPPQASSGTITSDPAPEAVRKQPGGRPGKANV
A.H.YY.RRLGSTSS.SSCGSA.C.GEAIPH.PG.PKAD....W.ASFF.GKS...F.AT.LESPE....P.A...TI..D.APE...KQPGG.PGKAN.
Retrocopy
AAHSYYWRRLGSTSSNSSCGSAQCPGEAIPHHPGFPKAD/SDCWRASFFLGKSILSFVATTLESPEGVDSPHACRSTISCDLAPETTGKQPGGQPGKANT


Parental protein
GPPS
GP.S
Retrocopy
GPQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide