RetrogeneDB ID:
retro_mputfur_349
Organism:
Location:
GL896904.1:10506541-10506975 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.77 %
Coverage:
85.55 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
GCSH
Parental gene aliases:
No gene alias available
Parental gene description:
glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208]

Genomic region (view in browser)





>retro_mputfur_349
CCACGTTGGGTGGCCCCCTGGGGGCTGAGGACCAGGCCATCCAAACGCTGCACCCAGGCT
CCCCTCCACTCTCCAGGTGCTAATTCACAGCCCAGCACACATGGGTAACAACAGAAAATG
GTATTGGAAGAGTGGGAATCAGTAATTTTGCACAGCAATTTTGTACAGATGTTTACTGCA
GTCTGCCTAAAGTTTGGACAAAATGGAACAAGCGAGGTGAGTTTGGTGCTTTGGAAAGTG
TGTAAGCTGCTAGTGAACTCTCTTATTTATCAGAAGAATTAACTGAAACTAGTGAAGCTC
TTGTAGAAAATCCAGGACTTGTCAAATCTTATTATGAAGAAGGTTGGCTGATCAAGATAA
CAGTCAGTGGCCCTTCAGAAATGGATGAATGAATGAGTCAAGAAGCACATGAGAAATGCA
TAAAATCTGAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PCLLRPWGLRTG-TVRTLRTGSALLSVRKFTDKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEVTEI
P....PWGLRT.....TL..GS..LS...FT..H.W.TTENGIG.VGISNFAQ....D.VYCSLP.V.TK.NK..EFGALESV.AASEL.S.LS.E.TE.
Retrocopy
PRWVAPWGLRTR/AIQTLHPGSPPLSRC*FTAQHTWVTTENGIGRVGISNFAQQFCTD-VYCSLPKVWTKWNKRGEFGALESV*AASEL-SYLSEELTET


Parental protein
NEALAENPGLVNKSCYEDGWLIKIALSNPSELDELMSEEAYEKYIKSIE
.EAL.ENPGLV.KS.YE.GWLIKI..S.PSE.DE.MS.EA.EK.IKS.E
Retrocopy
SEALVENPGLV-KSYYEEGWLIKITVSGPSEMDE*MSQEAHEKCIKSEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide