RetrogeneDB ID:
retro_mputfur_367
Organism:
Location:
GL896905.1:3467974-3468363 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.83 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
COX5B
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269]

Genomic region (view in browser)





>retro_mputfur_367
ATGGCTACAGGGTTACTTTGTAGAGTTGGAGCAAGGACATTGCAGGCCCTCAGGGTGTGT
GGTCCCAATGGAGTCACCATGGGGTGCTCCATGACACCTGGAGTTGGTGTTCCCACTGAT
GATGAGCAGATGACTGGGCTGGAGAAGGAGGTCATGACAGCTGCATGGAAGGGACTGAAT
CCGTACAATAATGCTAACCCTCTACGGCAGCTTTAGGCACCAAGGAACACCCTCATATCG
TCCCATCTATCACCCACAAGTAAACAGTGGGCTGCACTTTTGAAGAGGACAATGCTGCTG
TCATCTGGTTTTGGAAGCACAAAGGCGAGACCCAGCGATGTCTTAGTTTTGGAACCCATT
GGAAACTGGTGCCCCGGCAGCTGGCCCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASRLLRGAGALAAQAFRARGPNGVAAVRTMASRGGIPTDDDQATGLEREVMMAARKGLDPYNLLAP-KAAA-GTKEDPNLVPSITNKRIVGCICEEDNS
MA..LL...GA...QA.R..GPNGV.....M....G.PTDD.Q.TGLE.EVM.AA.KGL.PYN...P...AA.GTKE.P..VPSIT.K..VGC..EEDN.
Retrocopy
MATGLLCRVGARTLQALRVCGPNGVTMGCSMTPGVGVPTDDEQMTGLEKEVMTAAWKGLNPYNNANP/STAALGTKEHPHIVPSITHK*TVGCTFEEDNA


Parental protein
TVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH
.VIWFW.HKGE.QRC.S.GTH.KLVP.QLAH
Retrocopy
AVIWFWKHKGETQRCLSFGTHWKLVPRQLAH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide