RetrogeneDB ID:
retro_mputfur_373
Organism:
Location:
GL896905.1:8742357-8743317 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.04 %
Coverage:
91.98 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_373
GCCCGGAATTGTGTCTCAACCTCAGCTGCACCTGCTGCCTGCCACTGCCTCTGGACCAAG
GACCCCTCAAAGTGAACGAGCTTCGGGCCTTTGTGAAAATGTGTAAGCAGGATCCGAGCA
TTCTGCACACCGAGGAAATGCATTTCCTGTGGGAGTGGGTGGAGAGCATTGGGGGTAAAA
TACCACCTGCCACTCATAAAACTAAATCAGAAGACTATCATGGAAGAAAAACCAGATAGT
AAGAAGGCAAAGGAAAACATAAAGACAGATGAACCATTAAGTGAGGAAAGTGATCTAGAA
ATTGACAATGAAGGTGTGATTGAACCAAATACTGATGCCTCTCAAGAAATGGGAGATGAA
AATGTAGAGTTAACCAAGGAAATGAGGAATCAGGCAAATGATAAAAGAGTGGCTGCCATT
GCTGCCCTAAATGATGGTGAACTACAGAAAGCTGTTGACTTGTTCACAGATGCCCTCAAA
CTACATCCTCACTTGGTCATTCTGTATGACAAGAGAGCCAGTGTCTTCATCAAATTACAG
AAGCCAAATGCTGCCATTTGAGACTGTGACAGAGCTATTGAAAGAAATCCCGATTCAGCT
CAGCCTTATAAGTGGTGTGGGAAAGCACATAGACTTCTGGGCCATTGGGAAGAAGCAGCA
CATGATCTTGCCCTTGCTTATAATCTGGATTATGATGAAGATGTTAGTGCAATGCTGAAA
GAAGTTCAACCGAGGGCCCAGAGAATTACTCAACATTGGAGAAGGTATGAGTGAAAACGT
GAAGAGCAAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAAGCTTGGGAAGAACATGAG
AGAGCCCAGAGGGAGGAAGAACCCAGACAACAATCAGGAGCTCAGTATGGTTCTTTCCCA
GGTGGCTTTCCTGGGGGAATGCCTGGTTATTTTCCCAGAGGAATGCCTGGAATGGCGGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AWNRVATPAALAACHCLWTMDPRK-VSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSED-SIKEEKPDSKKAEENIKTDEPSSEES
A.N.V.T.AA.AACHCLWT.DP.K.V.ELRAFVKMCKQDPS.LHTEEM.FL.EWVES.GGKIPPATHKTKSED....E.....K.A.ENIKTDEP.SEES
Retrocopy
ARNCVSTSAAPAACHCLWTKDPSK/VNELRAFVKMCKQDPSILHTEEMHFLWEWVESIGGKIPPATHKTKSED\IMEEKPDSKK-AKENIKTDEPLSEES


Parental protein
DLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINP
DLEIDNEGVIEP.TDA.QEMGDEN.E.T.EM..QANDK.VAAI.ALNDGELQKA.DLFTDA.KL.P.L.ILY.KRASVFIKLQKPNAAI.DCDRAIE.NP
Retrocopy
DLEIDNEGVIEPNTDASQEMGDENVELTKEMRNQANDKRVAAIAALNDGELQKAVDLFTDALKLHPHLVILYDKRASVFIKLQKPNAAI*DCDRAIERNP


Parental protein
DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQYG
DSAQPYKW.GKAHRLLGHWEEAAHDLALA..LDYDED.SAMLKEVQPRAQ.I..H.R.YE.KREE.EIKERIERVKKA.EEHERAQREEE.R.QSGAQYG
Retrocopy
DSAQPYKWCGKAHRLLGHWEEAAHDLALAYNLDYDEDVSAMLKEVQPRAQRITQHWRRYE*KREEQEIKERIERVKKAWEEHERAQREEEPRQQSGAQYG


Parental protein
SFPGGFPGGMPGNFPGGMPGMAG
SFPGGFPGGMPG.FP.GMPGMAG
Retrocopy
SFPGGFPGGMPGYFPRGMPGMAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide