RetrogeneDB ID:
retro_mputfur_374
Organism:
Location:
GL896905.1:12347728-12348197 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.34 %
Coverage:
98.11 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_374
TTTCATTGTGACTACTGCAACACATACTTCACCCATGACACTCCAGCTGTGAGAAAGATA
CACTGTAGTAGTTGGAAACACAAAAAGAATGTGAAAGACTGCTATCAGAAATGCATGGAA
GAGCAGGCTCAGAGCCTGATCAATAAAACAACCACTGCACTTCAGCAAGGATAGATAACT
CCTACGGCATTCTTTGTTCCTCCTCCTCCAGAGGCAATGATCCCACCTCCCCACCAGTCT
CCAGATCCTCATTGCCTTGGTATGATGCCAACGCCCCATATGGAGGGCCCTCCCATGATG
CCAGTGATGGGCCCTCCTCCTCCTGGGATGATGCCACTGGCACCTGCTCCTGGAATGAGG
CCACCTATAGACAGTCACATGCCAATGATGCCTGTACCCCCAGTGGATGAGACTTCTTGC
TTGTCCCTTGATGGTGCCCAATCAGCCAGGAATGACTCGACCAGACAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMM
F.CDYC.TY.THD.P.VRK.HCS..KHK.NVKD.YQK.MEEQAQSLI.KTT.A.QQG.I.PT.F..PPP..AMIPPP...P.P...GMMP.PHM.GPPMM
Retrocopy
FHCDYCNTYFTHDTPAVRKIHCSSWKHKKNVKDCYQKCMEEQAQSLINKTTTALQQG*ITPTAFFVPPPPEAMIPPPHQSPDPHCLGMMPTPHMEGPPMM


Parental protein
PMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPM-MRPPARPMMVPTRPGMTRPDR
P.MGPPPPGMMP..PAPGMRPP...HMPMMP.PP..MR..A.P.MVP..PGMTRPDR
Retrocopy
PVMGPPPPGMMPLAPAPGMRPPIDSHMPMMPVPPV\MRLLACPLMVPNQPGMTRPDR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide