RetrogeneDB ID:
retro_mputfur_375
Organism:
Location:
GL896905.1:12723666-12724737 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.67 %
Coverage:
56.31 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
GGA1
Parental gene aliases:
No gene alias available
Parental gene description:
golgi-associated, gamma adaptin ear containing, ARF binding protein 1 [Source:HGNC Symbol;Acc:17842]

Genomic region (view in browser)





>retro_mputfur_375
ATGGAGCCCGCGATGGAGCCGGAGACTCTGGATGCGCGAATCAACAGAGCCATCAACGCC
CTGAACAAGGAGCTGAATTGGACCAGCATCAACAGCTTCTGCAAGCAGCTCAACGAGGAC
TTTGAGGAGCCTCCACTTGCCACCCAGCTGTTGGCTCACAAGATCCAGTCCACCACAGGA
GTGGGAGGCGATCCAAGCCCTGACGTTTCTGGAAGCATGCATGAAGAGCTGTGGCAAAAG
GTTCCATGACGAGGTGGGTAAGTTCTGCTTTCTCTATGAGCTCATCAAGGTCGTGTCTCC
CAAGTACCTGGGCTTGCGGATGTTGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTA
TAGCTGGATGGTCAGCCTGCCCGAGGAAGTGAAAATTGCAGAGGCCTACCAGATGCTGAA
GAAGCAGGGGATTGTGAAGTCTGACCTGAAGCTACCAGATGATGCCACTTTTCCTCTTCC
TCCTCCATGACCCAAGAATGTGATCTTCGAAGAGGAGGAGAAATCCAAGATGCTGGCCCA
CTTGCTGAAGAGCTCCTACCCCGAGGACCTCCGAGCAGCCAACAAACTCATCAAGGACAT
GGTGCAGGGGGACCAGAAGCAGATGGAGAAGATCTCAAAGCAGGTGAGCGCCATTGAGGA
GGTCAACAACAATGTGAAGCTGCTGACCGAGATGGTGATGAGCCACAGCCAGGGCGGGGC
CTCAGCCTGCAGCAGCGGGGACCTCATGAAGGAGCTGTACCAGTACTGTGAACAGACGCA
GCCAGCACTTTTCCGACTGGCCAGTGACACAGAAGACAATGGCGAGGTCTTAGCTGAGAT
CCTGCAGGCCAAGGACAACCTCACCCAGTACAACGTGTACAAGCAGCTGCTGAGGGGTGA
ACGGCGATGTGGCAGCTGGCTCCCTCCCTGGGAGCACCTTGGCCCTGCTGGACCTCTCTG
GCCTGGATCTCCCTCCTACGGGCACCACCTGCCCTGCCGTGCCCACCTGCTTTACTGACC
TGGCCAGCCCCAAGCAGCCTAGCACCTCAGTTTCCCTGCTTGATGATGAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEPAMEPETLEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVS
MEPAMEPETL.ARINRA.N.LNKELNW.SIN.FC.QLNEDFE.PPLAT.LLAHKIQS.PQEWEAIQALT.LE.CMKSCGKRFHDEVGKF.FL.ELIKVVS
Retrocopy
MEPAMEPETLDARINRAINALNKELNWTSINSFCKQLNEDFEEPPLATQLLAHKIQS\PQEWEAIQALTFLEACMKSCGKRFHDEVGKFCFLYELIKVVS


Parental protein
PKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDATFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKE
PKYLG.R..EKVKNKILELLYSW.V.LPEEVKIAEAYQMLKKQGIVKSD.KLPDDATFPLPPP.PKNVIFE.EEKSKMLA.LLKSS.PEDLRAANKLIK.
Retrocopy
PKYLGLRMLEKVKNKILELLYSWMVSLPEEVKIAEAYQMLKKQGIVKSDLKLPDDATFPLPPP*PKNVIFEEEEKSKMLAHLLKSSYPEDLRAANKLIKD


Parental protein
MVQEDQKRMEKISKRVSAIEEVNNNVKLLTEMVMSHSQGGASARSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVISLYKQLVR
MVQ.DQK.MEKISK.VSAIEEVNNNVKLLTEMVMSHSQGGASA.SS.DLMKELYQ.CE...P.LFRLASDTEDN.E.LAEILQA.DNLTQ....YKQL.R
Retrocopy
MVQGDQKQMEKISKQVSAIEEVNNNVKLLTEMVMSHSQGGASACSSGDLMKELYQYCEQTQPALFRLASDTEDNGEVLAEILQAKDNLTQ-YNVYKQLLR


Parental protein
GEEVNG-EAAAGSGSLPGSTSALLDLSGLDLPPAGTTYPPMPTRPADPA-SPEQPSTSVS
GE...G...A...G........L...S.L..PPA....P...T.PA.....P..P....S
Retrocopy
GERRCG/QLAPSLGAPWPCWTSLAWISLLRAPPALPCPPALLTWPAPSSLAPQFPCLMMS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide