RetrogeneDB ID:
retro_mputfur_377
Organism:
Location:
GL896905.1:23233118-23233377 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.86 %
Coverage:
76.79 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SNRPF
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]

Genomic region (view in browser)





>retro_mputfur_377
ATGAGTTTGTCCTTCAGTCCCAAACCTTCCCTGAATGGAGTAACAGGAAAACTAATAATG
GTGGAACCTAAGTGGGAAATGGAGTACAAAGGCTACCTGGTGTCTGTAGATGGCTATATG
AATATGCAGCTCGCAAACACGGAAAAATAAACCAATGGAGCACTGTCTGCACATTTGGCT
AAAGATTTAATAAGGTGTAATAATGTCCTTTATATCAGGGATGTTGAAGAAGAGGAAGAA
GATGGGGGAAATGAAAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEED-GEMRE
MSL...PKP.LNG.TGK..MV..KW.MEYKGYLVSVDGYMNMQLANTE....GALS.HL...LIRCNNVLYIR.VEEEEED.GEM.E
Retrocopy
MSLSFSPKPSLNGVTGKLIMVEPKWEMEYKGYLVSVDGYMNMQLANTEK*TNGALSAHLAKDLIRCNNVLYIRDVEEEEED\GEMKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide