RetrogeneDB ID:
retro_mputfur_379
Organism:
Location:
GL896906.1:1150432-1150991 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.01 %
Coverage:
54.44 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_379
AGTACCCGCGCCTTGAATCGGGTCGCAACCTCAGCCACGCCTGCCGCCTGCCACTGCCTC
TGGACCATGGACCCCCGCAAAGTGAGCGAGCTTCGGGCTTTCGTGAAAATGTATAAGCAG
GATCCGAGCGTTCTGCACACGGAGGAAATGCGTTTCCTGCGGGAGTGGGTGGAGAGCATG
GGGGGTAAAATACCACCTGCCACTCATAAAACTAAATCAGAAGACAGTATCAAGGAAGAA
AAACCAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGAGTGAGGAGAGTGATCTAGA
AATTGACAATGAAGGTGTGATTGAACCAGATAACGATGCCCCTCAAGGAATGGGAGATGA
AAATGCAGAGATAACCAAGGAAATGATGGATCAGGCAAATGATGAAAAAGTGGCTGCCAT
TGATGCCCTAAATGATGGTGAACCACAGAAAGCCATTGACTTGTTCACAGATGCCATCAA
ACTAAATTCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACA
GAAGCCAAATGCTGCCATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTD-EPSSE
STRA.NRVAT.A..AACHCLWTMDPRKVSELRAFVKM.KQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKT..E.S..
Retrocopy
STRALNRVATSATPAACHCLWTMDPRKVSELRAFVKMYKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTE\EESDL


Parental protein
ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAI
E.D....NEGVIEPD.DAPQ.MGDENAEIT.EMMDQAND.KVAAIDALNDGE.QKAIDLFTDAIKLN.RLAILYAKRASVFIKLQKPNAAI
Retrocopy
EID----NEGVIEPDNDAPQGMGDENAEITKEMMDQANDEKVAAIDALNDGEPQKAIDLFTDAIKLNSRLAILYAKRASVFIKLQKPNAAI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide