RetrogeneDB ID:
retro_mputfur_381
Organism:
Location:
GL896906.1:7499467-7500002 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.45 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
NOP16 nucleolar protein-like protein [Source:UniProtKB/TrEMBL;Acc:G9KDN0]

Genomic region (view in browser)





>retro_mputfur_381
ATGCCCAAAGCCAAGGGGAAGACCAGGAGACAGAAGTTCAGTTACAATGTTAACCAGAAG
CGGCTGAACCAGAATGTTCGATGGAAAGCGGCGTCATGGGTCAAGTGCTCCCACATCCAA
CATGCCTGGAACCACGCCAAATCCATGCAACAGAACCTGATCGAGATGGGGTTGGCTATG
GACCCCAACAAGGCGGTTCCTCTCTGTAAGAGAAAGGTGAAGGCCATGGATGTGGATGTA
GAGGAGAGGTCTATGGAGCTTGTGCGGAAGCCCTATGTACTAAACGACCTGGAGGCAGAA
CCCAGCCTTTCAGAAAAGAAAGGAAACACACTTTCTCGAGAACTCATTGACTATGTGTGC
TACATGGTGGAGAAGCATGGAGACAACTACAAGGCTATGGCCCAGGATGAGAAGAATTAC
TATCCACATACCCTGCAAACAGATTCGGAATAAGATCAACGTCTATAAGCATTTTTACCC
AACGGAGTGGCAAACCTTCATTGATTCTTTGCAGAAGAGTAAGAGGGAGGTTGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPKAKGKTRRQKFGYNVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAMDPNKAVPLRKRKVKAMEVDIEERPKELVRKPYVLNDLEAE
MPKAKGKTRRQKF.YNVN.KRLN.N.R.KAA....CSHI.HAW.HAKS..QNL.EMGLAMDPNKAVPL.KRKVKAM.VD.EER..ELVRKPYVLNDLEAE
Retrocopy
MPKAKGKTRRQKFSYNVNQKRLNQNVRWKAASWVKCSHIQHAWNHAKSMQQNLIEMGLAMDPNKAVPLCKRKVKAMDVDVEERSMELVRKPYVLNDLEAE


Parental protein
ASLPEKKGNTLSRDLIDYVRYMVENHGEDYKAMARDEKNYYQDT-PKQIRNKINVYKRFYPAEWQTFIDSLQKNKMEVE
.SL.EKKGNTLSR.LIDYV.YMVE.HG..YKAMA.DEKNYY..T..KQIRNKINVYK.FYP.EWQTFIDSLQK.K.EVE
Retrocopy
PSLSEKKGNTLSRELIDYVCYMVEKHGDNYKAMAQDEKNYYPHT\CKQIRNKINVYKHFYPTEWQTFIDSLQKSKREVE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide