RetrogeneDB ID:
retro_mputfur_388
Organism:
Location:
GL896906.1:17705222-17705528 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.53 %
Coverage:
73.38 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
Rps17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1309526]

Genomic region (view in browser)





>retro_mputfur_388
TTGTGCAAAGATATCACTGTTATTCCCAGCAAGATGTTCTGTGACAAGATAGTGGGCCAT
GTCACATAACTGGTGAAGGGGATTCAGAGAGGCCCGGAGAGAGGGATCTCCAGCAAGCAG
CAGGAGGTGGAGAGAGAAAGGAGAGAGAATGACGTTCCTCATGTCTCAGCCCTGCATCAG
GAGATCATGGAAGTAGATCCTGACACTAAGGACATGTTGAAACTCTTGGACTTTGGCAGT
GTGTCCAGTCTACAGGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACACCACGTGGA
ACTGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRG
.C..I..IPSK....KI.G.VT.L.K.IQRGP.RGIS.K.QE.ERERR.N.VP.VSAL.QEI.EVDPDTK.MLKLLDFGS.S.LQVTQPTVGMNFKTPRG
Retrocopy
LCKDITVIPSKMFCDKIVGHVT*LVKGIQRGPERGISSKQQEVERERRENDVPHVSALHQEIMEVDPDTKDMLKLLDFGSVSSLQVTQPTVGMNFKTPRG


Parental protein
AV
.V
Retrocopy
TV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide