RetrogeneDB ID:
retro_mputfur_396
Organism:
Location:
GL896907.1:5127264-5128185 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.02 %
Coverage:
96.87 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NSMCE4A
Parental gene aliases:
No gene alias available
Parental gene description:
non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935]

Genomic region (view in browser)





>retro_mputfur_396
ATAGACCCCAGCCTCCTAGGGCTCGCGGGGGACGAGGAGAAATGCCGGAAAATCCGCAAG
AAGTACCGGCAGCTCATCTATAACGTCCAGCAGAACCGTGATGACCTAGTGAACACCGTG
AGCGACTCGTTAACCTTGGCGCTGGAAGAAGCCGATGTCCTGTTTGATGGAGTGAGCCGA
ACAAGAGAAGCTGCTCTCGATGCCCAGTTTCTTGTTCTGGCTTCTGACTTGGGTAAAGAA
AAAGCAAAGCAACTAAATTGCGATATGAGCTTTTTTAACCAAGTAGCGTTTTGTGACTTT
CTGTTTATATTTGTGGGTCTAAACTGGATGGAAGAGGAACATGAGGAATTGAGTGGCTTT
GATGATAATATAGTTCTTTCCTTCTGGGACACAGTACATAAGGAGGCGTCGTCCTGGATT
TTGCAAGCTGAGACATTCCACTTTATTTTTGGTTCATTCAAGTCCAAACCTGCACCAAGG
CCCCGACTTGAACACCTCAAAAAAGCTCTCAAAATGGAAGAAAATGGGGATATGCCTACA
AAGCTGAGGAAGTTGGACCTGAGTAATAATCAAGAAACAACAGAAAAAGAAGTAGAAAGA
ATCTTGGGATTGTTGCAAACTTACTTTCAGAAGTATCCTGATACTCCTGTGTCCTATTTT
GAGTTTGTGATTGATCCAAACTCTTTTTCTCGTACTGTGGAGAATATATTTTATGTTTCT
TTCATTATAAGGGATGGTTTTGCGAGACTAAGGCTTGACCAAGACAGGCTGCCAATATTA
GAGCCAATTAATATTAACCAAGTGGGTGAGGGAAATGATCCCTGTTCTCATGGCAGGAAA
CAAGGAGTTATATCTTTGAGTTTACAGGACTGGAAAAATATTGTGGCAACTTTTGAAATT
TCAGAGGCTATGATCACAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VDPASLEAETDHGLCRQIRHQYRALINSVQQNREDILNA-SDKLTEVLEEANTLFNGVSRAREAVLDAQFLVLASDLGKEKAKQLRSDLNSFDMLRYVET
.DP..L....D...CR.IR..YR.LI..VQQNR.D..N..SD.LT..LEEA..LF.GVSR.REA.LDAQFLVLASDLGKEKAKQL..D...F........
Retrocopy
IDPSLLGLAGDEEKCRKIRKKYRQLIYNVQQNRDDLVNTVSDSLTLALEEADVLFDGVSRTREAALDAQFLVLASDLGKEKAKQLNCDMSFFNQVAFCDF


Parental protein
LLTHMGVNPLEAEELIRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEFPVPKPRSDRPRKGPRTEEKKTMPDQLNEMEESH-QEATEK
L....G.N..E.E.....E.S.....IV...W....K.A........TFHF..GS.....P.P.PR.....K....EE...MP..L.....S..QE.TEK
Retrocopy
LFIFVGLNWMEEEH---EELSGFDDNIVLSFWDTVHKEASSWILQAETFHFIFGSFKSK-PAPRPRLEHLKKALKMEENGDMPTKLRKLDLSNNQETTEK


Parental protein
EVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIKLDQDRLPIIEPVNINEESEGIDQNTQIRNQGIIALSYRDWEEIVK
EVERILGLLQTYF...PDTP.S.F.FV.DP.SF.RTVENIF.VSFIIRDGFAR..LDQDRLPI.EP.NIN...EG.D.....R.QG.I.LS..DW..IV.
Retrocopy
EVERILGLLQTYFQKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARLRLDQDRLPILEPININQVGEGNDPCSHGRKQGVISLSLQDWKNIVA


Parental protein
TFEISEPVIAS
TFEISE..I..
Retrocopy
TFEISEAMITN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide